Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400078190 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16620.1 | PGSC0003DMT400078190 | AT3G46740.1 | 15829604 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g043010.1.1 | Tomato | nucleus | 59.87 | 87.09 |
| HORVU1Hr1G053280.1 | Barley | mitochondrion | 44.57 | 67.72 |
| CDX70657 | Canola | cytosol | 17.75 | 64.83 |
| CDY66172 | Canola | cytosol | 57.13 | 61.36 |
| PGSC0003DMT400004034 | Potato | cytosol | 75.26 | 58.26 |
| CDX70551 | Canola | cytosol | 19.45 | 57.22 |
| AT3G16620.1 | Thale cress | cytosol | 58.45 | 56.84 |
| CDX70659 | Canola | cytosol | 5.67 | 55.56 |
| CDY43117 | Canola | cytosol | 57.22 | 54.89 |
| CDX78660 | Canola | cytosol | 33.99 | 54.3 |
| Bra006330.1-P | Field mustard | cytosol | 33.99 | 54.3 |
| CDX92086 | Canola | cytosol, endoplasmic reticulum, vacuole | 54.39 | 54.19 |
| Bra022170.1-P | Field mustard | nucleus | 54.39 | 54.19 |
| VIT_03s0038g02070.t01 | Wine grape | nucleus | 64.49 | 53.57 |
| KRH24252 | Soybean | mitochondrion | 61.19 | 53.51 |
| EER91974 | Sorghum | cytosol | 49.67 | 53.19 |
| Os10t0548800-01 | Rice | cytosol, plasma membrane, plastid | 50.05 | 52.58 |
| Zm00001d029846_P001 | Maize | plastid | 49.01 | 52.06 |
| CDX92087 | Canola | cytosol | 57.41 | 51.44 |
| Zm00001d047130_P001 | Maize | cytosol | 49.2 | 50.93 |
| AT2G16640.3 | Thale cress | cytosol | 57.98 | 50.91 |
| CDX70641 | Canola | cytosol | 37.39 | 49.38 |
| CDX70550 | Canola | cytosol | 13.13 | 49.12 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 48.91 | 48.5 |
| TraesCS1B01G222000.1 | Wheat | cytosol | 49.1 | 48.42 |
| TraesCS1D01G211300.1 | Wheat | cytosol, golgi | 49.1 | 48.42 |
| KRH29257 | Soybean | endoplasmic reticulum | 61.47 | 47.62 |
| GSMUA_Achr8P19440_001 | Banana | cytosol | 47.03 | 41.47 |
| CDX70658 | Canola | cytosol | 4.91 | 40.62 |
| PGSC0003DMT400029640 | Potato | cytosol | 37.68 | 40.14 |
| PGSC0003DMT400078922 | Potato | endoplasmic reticulum | 29.46 | 37.28 |
| GSMUA_Achr11P... | Banana | cytosol | 49.1 | 36.88 |
| PGSC0003DMT400013477 | Potato | cytosol | 9.25 | 32.56 |
| PGSC0003DMT400030414 | Potato | cytosol, plastid | 8.69 | 30.56 |
| PGSC0003DMT400016119 | Potato | cytosol, nucleus, plastid | 33.33 | 25.94 |
Protein Annotations
| EntrezGene:102594520 | MapMan:23.1.2.2 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | GO:GO:0016817 | InterPro:G_AIG1 | InterPro:IPR006703 |
| UniProt:M1AKL7 | InterPro:P-loop_NTPase | PFAM:PF04548 | PFAM:PF11886 | EnsemblPlantsGene:PGSC0003DMG400009579 | PGSC:PGSC0003DMG400009579 |
| EnsemblPlants:PGSC0003DMT400024781 | PFscan:PS51720 | PANTHER:PTHR10903 | PANTHER:PTHR10903:SF47 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00993 |
| InterPro:TOC159_MAD | InterPro:Toc86_159 | UniParc:UPI0002959E28 | RefSeq:XP_006362716.1 | SEG:seg | : |
Description
Protein translocase [Source:PGSC_GENE;Acc:PGSC0003DMG400009579]
Coordinates
chr11:-:28850811..28855507
Molecular Weight (calculated)
116033.0 Da
IEP (calculated)
5.252
GRAVY (calculated)
-0.458
Length
1059 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDCPIDTAAP IAQTGRPCTN VEVKEEELTG SVLISQECLD EQDIVSDDVT THQGLNETES PAVELVNLND KVQENTKERK DVLNCDATDL QDLKGEESPA
0101: VALVKSNDKV QEYAEEQKDA TDHQVLAGKD SPAVGLGNLN DKVQLFMEQQ KDDLSSDATD DQILNDKESP AVGLAISNDK VDDQKDASVF CTSASENHTE
0201: NSSRETVTAE DEKWKSSEGS VSNNNGKVGV STAEFVSVSS KASQLPLVDA IIGVNKAVAQ ESEKPSIKEL KQNVTGVRKP EAGSARNLSS SSGSSVTRTP
0301: PPARPAGLGR AAPLLEPSPR VVQQPRVNGS ASSVQNQLVE EPTNGESEEY DETREELQMI RVKFLRLAHR LGQNPHNVVV AQVLYRLGLA EQLRGRNGSR
0401: VAAFSFDRAS AMAEQLEAAG QEALDFSCTI MVLGKTGVGK SATINSIFGE AKFGTDAFQI GTKKVQDVIG TVQGIKVRVI DTPGLLPSWA DQRRNEKILH
0501: SVKRFIKKMS PDIVLYLDRL DMQSRDYGDM PLLRTITEVF GPSIWFNAIV VLTHAASAPP EGPNGTTTSY DMFVTQRSHV VQQAIRQAAG DMRLMNPVSL
0601: VENHSACRTN RVGLRVLPNG QVWKPHLLLL SFASKILAEA NTLLKLQDSP PGQTYATRSR SPPLPFLLSS LLQSRPQVKL PADQFSDDNE TLDDDLDESS
0701: DSEDESEYDQ LPAFKRLTKA QLAKLTQEQK KAYNDELEYR EKLFMKKQLK EERKRRRMMK KMQAAAKDLP INTNETVEEE TGSAASVPVP MPDLALPASF
0801: DSDNPTHRYR YLDSSNQWLV RPVLEPNGWD HDVGYEGINV ERLFVIKDKI PLSFSSQLSK DKKDANLQME IASSVKHGNG KVTSLGFDMQ SVGKDLAYTL
0901: RSETRFSNYR KNKATAGLSV TLLGDVMTGG VKVEDKLIVN KRGLLVISGG AMFGRGDVAY GGSLEATLRD KDHPLGRFLS TLGLSVMDWH GDLAIGCNSQ
1001: TQIPVGRYTN LIGRVNINNK GSGQVSILLN SSEQLQIALI SLLPLVRKLI SYTQSVQFG
0101: VALVKSNDKV QEYAEEQKDA TDHQVLAGKD SPAVGLGNLN DKVQLFMEQQ KDDLSSDATD DQILNDKESP AVGLAISNDK VDDQKDASVF CTSASENHTE
0201: NSSRETVTAE DEKWKSSEGS VSNNNGKVGV STAEFVSVSS KASQLPLVDA IIGVNKAVAQ ESEKPSIKEL KQNVTGVRKP EAGSARNLSS SSGSSVTRTP
0301: PPARPAGLGR AAPLLEPSPR VVQQPRVNGS ASSVQNQLVE EPTNGESEEY DETREELQMI RVKFLRLAHR LGQNPHNVVV AQVLYRLGLA EQLRGRNGSR
0401: VAAFSFDRAS AMAEQLEAAG QEALDFSCTI MVLGKTGVGK SATINSIFGE AKFGTDAFQI GTKKVQDVIG TVQGIKVRVI DTPGLLPSWA DQRRNEKILH
0501: SVKRFIKKMS PDIVLYLDRL DMQSRDYGDM PLLRTITEVF GPSIWFNAIV VLTHAASAPP EGPNGTTTSY DMFVTQRSHV VQQAIRQAAG DMRLMNPVSL
0601: VENHSACRTN RVGLRVLPNG QVWKPHLLLL SFASKILAEA NTLLKLQDSP PGQTYATRSR SPPLPFLLSS LLQSRPQVKL PADQFSDDNE TLDDDLDESS
0701: DSEDESEYDQ LPAFKRLTKA QLAKLTQEQK KAYNDELEYR EKLFMKKQLK EERKRRRMMK KMQAAAKDLP INTNETVEEE TGSAASVPVP MPDLALPASF
0801: DSDNPTHRYR YLDSSNQWLV RPVLEPNGWD HDVGYEGINV ERLFVIKDKI PLSFSSQLSK DKKDANLQME IASSVKHGNG KVTSLGFDMQ SVGKDLAYTL
0901: RSETRFSNYR KNKATAGLSV TLLGDVMTGG VKVEDKLIVN KRGLLVISGG AMFGRGDVAY GGSLEATLRD KDHPLGRFLS TLGLSVMDWH GDLAIGCNSQ
1001: TQIPVGRYTN LIGRVNINNK GSGQVSILLN SSEQLQIALI SLLPLVRKLI SYTQSVQFG
0001: MGDGAEIVTR LYGDEKKLAE DGRISELVGS DEVKDNEEEV FEEAIGSQEG LKPESLKTDV LQEDFPLASN DEVCDLEETS RNERGVENLK VNYSEIGESH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
0101: GEVNEQCITT KEADSDLVTL KMNDYDHGEV ADADISYGKM ASSLDVVENS EKATSNLATE DVNLENGNTH SSSENGVVSP DENKELVAEV ISVSACSVET
0201: GSNGIDDEKW EEEIDVSAGM VTEQRNGKTG AEFNSVKIVS GDKSLNDSIE VAAGTLSPLE KSSSEEKGET ESQNSNGGHD IQSNKEIVKQ QDSSVNIGPE
0301: IKESQHMERE SEVLSSVSPT ESRSDTAALP PARPAGLGRA APLLEPAPRV TQQPRVNGNV SHNQPQQAED STTAETDEHD ETREKLQFIR VKFLRLSHRL
0401: GQTPHNVVVA QVLYRLGLAE QLRGRNGSRV GAFSFDRASA MAEQLEAAAQ DPLDFSCTIM VLGKSGVGKS ATINSIFDEL KISTDAFQVG TKKVQDIEGF
0501: VQGIKVRVID TPGLLPSWSD QHKNEKILKS VRAFIKKSPP DIVLYLDRLD MQSRDSGDMP LLRTITDVFG PSIWFNAIVG LTHAASAPPD GPNGTASSYD
0601: MFVTQRSHVI QQAIRQAAGD MRLMNPVSLV ENHSACRTNR AGQRVLPNGQ VWKPHLLLLS FASKILAEAN ALLKLQDNIP GGQFATRSKA PPLPLLLSSL
0701: LQSRPQAKLP EQQYDDEDDE DDLDESSDSE EESEYDELPP FKRLTKAEMT KLSKSQKKEY LDEMEYREKL FMKRQMKEER KRRKLLKKFA AEIKDMPNGY
0801: SENVEEERSE PASVPVPMPD LSLPASFDSD NPTHRYRYLD TSNQWLVRPV LETHGWDHDI GYEGVNAERL FVVKDKIPVS FSGQVTKDKK DAHVQLELAS
0901: SVKHGEGRST SLGFDMQNAG KELAYTIRSE TRFNKFRKNK AAAGLSVTLL GDSVSAGLKV EDKLIANKRF RMVMSGGAMT SRGDVAYGGT LEAQFRDKDY
1001: PLGRFLSTLG LSVMDWHGDL AIGGNIQSQV PIGRSSNLIA RANLNNRGAG QVSIRVNSSE QLQLAVVALV PLFKKLLTYY SPEQMQYGH
Arabidopsis Description
TOC120Translocase of chloroplast 120, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LUS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.