Subcellular Localization
min:
: max
Winner_takes_all: golgi, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
16595579
plastid: 18419817 golgi: 23128297 golgi: 25769308 unclear: 25769308 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
18419817
doi
Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G228900.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS4D01G230000.1 | Wheat | cytosol | 99.69 | 99.69 |
| HORVU4Hr1G064110.2 | Barley | cytosol | 99.08 | 90.73 |
| Os03t0240500-01 | Rice | plastid | 90.49 | 90.21 |
| KXG39799 | Sorghum | cytosol | 88.65 | 88.65 |
| Zm00001d028373_P002 | Maize | cytosol | 87.73 | 85.63 |
| Zm00001d047965_P002 | Maize | cytosol | 86.5 | 79.66 |
| GSMUA_Achr1P22210_001 | Banana | cytosol | 31.9 | 74.82 |
| VIT_02s0109g00360.t01 | Wine grape | cytosol | 64.72 | 68.06 |
| PGSC0003DMT400013477 | Potato | cytosol | 62.58 | 67.77 |
| VIT_16s0039g02670.t01 | Wine grape | cytosol | 63.8 | 67.53 |
| PGSC0003DMT400030414 | Potato | cytosol, plastid | 60.12 | 65.12 |
| Solyc03g095220.2.1 | Tomato | plastid | 51.23 | 64.48 |
| Solyc05g052160.2.1 | Tomato | plastid | 59.51 | 64.45 |
| AT5G05000.3 | Thale cress | cytosol | 59.51 | 61.98 |
| CDX98810 | Canola | cytosol | 59.2 | 61.66 |
| KRG94982 | Soybean | cytosol | 58.9 | 61.54 |
| CDY52130 | Canola | cytosol, plastid | 58.9 | 61.34 |
| KRH64901 | Soybean | cytosol | 57.98 | 60.38 |
| CDX80936 | Canola | cytosol | 57.98 | 60.38 |
| CDY55323 | Canola | cytosol | 53.99 | 59.26 |
| CDY32453 | Canola | cytosol | 53.37 | 58.59 |
| Bra032612.1-P | Field mustard | cytosol | 53.37 | 58.59 |
| CDX89987 | Canola | cytosol | 52.76 | 57.72 |
| Bra033311.1-P | Field mustard | cytosol | 52.76 | 57.72 |
| AT1G02280.1 | Thale cress | cytosol | 52.45 | 57.58 |
| CDY15228 | Canola | cytosol | 52.15 | 57.05 |
| CDX70178 | Canola | cytosol | 59.51 | 25.56 |
| Bra009405.1-P | Field mustard | cytosol | 56.13 | 24.56 |
| TraesCS5A01G112900.1 | Wheat | mitochondrion | 24.85 | 10.33 |
| TraesCS1A01G208000.1 | Wheat | cytosol | 27.3 | 8.33 |
| TraesCS4A01G358400.1 | Wheat | plastid | 26.69 | 7.3 |
| TraesCS1A01G093900.3 | Wheat | cytosol, nucleus, plastid | 30.67 | 7.02 |
| CDX98809 | Canola | cytosol | 0.61 | 0.44 |
Protein Annotations
| MapMan:23.1.2.3 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009536 | GO:GO:0009707 | GO:GO:0015450 | GO:GO:0016020 |
| InterPro:G_AIG1 | InterPro:IPR006703 | InterPro:P-loop_NTPase | PFAM:PF04548 | PIRSF:PIRSF038134 | PFscan:PS51720 |
| PANTHER:PTHR10903 | PANTHER:PTHR10903:SF43 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00991 | InterPro:Toc34 | EnsemblPlantsGene:TraesCS4A01G072800 |
| EnsemblPlants:TraesCS4A01G072800.1 | TIGR:cd01853 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:+:71250672..71253812
Molecular Weight (calculated)
36284.9 Da
IEP (calculated)
9.832
GRAVY (calculated)
-0.253
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPIPREWV GLQQFPAATQ TKLHELLGKL KEENVSTLTI LVMGKGGVGK SSTVNSIVGE RVANVSAFQS EGLRPMMCSR TRAGFTLNII DTPGLIEGGY
101: INEQAVEIIK RFLLEKTIDV LLYVDRLDTY RMDTLDEQVI RAITNSLGKA IWRRTLVVLT HAQLSPPDGI DYNDFLARRS ESLLRYIRSG AGIGKREYAD
201: FPLPIALAEN SGRCKTNENG AKILPDGTPW IPNLMKEITI VVSNGSKSIH VDQKLIDGPN PNNRWKKYIP LILAVQYFFV VKGIRRAIHS DISNGKLDDW
301: EQRYRDLVGS GNPVDQKVSS SRNPKA
101: INEQAVEIIK RFLLEKTIDV LLYVDRLDTY RMDTLDEQVI RAITNSLGKA IWRRTLVVLT HAQLSPPDGI DYNDFLARRS ESLLRYIRSG AGIGKREYAD
201: FPLPIALAEN SGRCKTNENG AKILPDGTPW IPNLMKEITI VVSNGSKSIH VDQKLIDGPN PNNRWKKYIP LILAVQYFFV VKGIRRAIHS DISNGKLDDW
301: EQRYRDLVGS GNPVDQKVSS SRNPKA
001: MAALQTLREW IGIQQFPPAT QSKLLEILGK YKEEDVSSLT VLVMGKGGVG KSSTVNSVIG EKAAAVSTFQ SEGLRPTLVS RTRSGFTLNI IDTPGLIEGG
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS
101: YVNDQAINII KRFLLNMTID VLLYVDRLDV YRVDDLDRQV VGAITDAFGK EIWKKSALVL THAQFSPPDG LNYNHFVSKR SNALLKVIQT GAQLKKQDLQ
201: GFSIPVILVE NSGRCHKNES DEKILPCGTS WIPNLFNKIT EISFNGNKAI HVDKKLVEGP NPNERGKKLI PLMFAFQYLL VMKPLVRAIK SDVSRESKPA
301: WELRDSGLAS RRS
Arabidopsis Description
TOC34Translocase of chloroplast 34, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q38906]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.