Factsheet for TraesCS2B01G162000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G208000.1
TraesCS1B01G222000.1
TraesCS1D01G211300.1
TraesCS4A01G072800.1
TraesCS4A01G095300.1
TraesCS4A01G194000.1
TraesCS4B01G209200.1
TraesCS4B01G228900.1
TraesCS4D01G119300.1
TraesCS4D01G209900.1
TraesCS4D01G230000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63900.1	TraesCS4A01G072800.1	AT1G02280.1	23118188
AT1G63900.1	TraesCS4B01G228900.1	AT1G02280.1	23118188
AT1G63900.1	TraesCS4D01G230000.1	AT1G02280.1	23118188
AT1G63900.1	TraesCS1A01G208000.1	AT3G16620.1	23118188
AT1G63900.1	TraesCS1B01G222000.1	AT3G16620.1	23118188
AT1G63900.1	TraesCS1D01G211300.1	AT3G16620.1	23118188
AT1G63900.1	TraesCS4A01G095300.1	AT3G46740.1	23118188
AT1G63900.1	TraesCS4A01G194000.1	AT3G46740.1	23118188
AT1G63900.1	TraesCS4B01G209200.1	AT3G46740.1	23118188
AT1G63900.1	TraesCS4D01G119300.1	AT3G46740.1	23118188
AT1G63900.1	TraesCS4D01G209900.1	AT3G46740.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	100.0	100.0
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	99.71	99.71
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	99.41	99.41
EER99814	Sorghum	endoplasmic reticulum, golgi	92.08	91.55
Os07t0647800-01	Rice	endoplasmic reticulum	74.19	88.15
GSMUA_Achr7P18450_001	Banana	endoplasmic reticulum, golgi	77.13	76.68
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	72.43	72.01
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	71.26	71.05
KRH71471	Soybean	endoplasmic reticulum, golgi	69.5	69.91
KRH31972	Soybean	endoplasmic reticulum, golgi	68.62	69.03
CDY25541	Canola	endoplasmic reticulum, vacuole	67.74	67.74
AT1G63900.1	Thale cress	endoplasmic reticulum, golgi	68.04	67.64
CDY34384	Canola	endoplasmic reticulum, vacuole	67.74	67.35
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	67.74	67.35
Zm00001d007060_P003	Maize	extracellular, plasma membrane	76.25	64.04
Solyc06g084360.2.1	Tomato	nucleus	70.38	62.99
CDX89169	Canola	extracellular	50.73	49.43
Bra040424.1-P	Field mustard	endoplasmic reticulum, extracellular	50.44	49.43
CDX93939	Canola	extracellular	49.85	48.3
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	43.99	44.38
Bra007725.1-P	Field mustard	plasma membrane	45.75	40.84
CDY63334	Canola	endoplasmic reticulum, extracellular	46.04	40.36

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10	InterPro:GIDE	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0006996	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF12483	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18	SUPFAM:SSF57850
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2B01G162000	EnsemblPlants:TraesCS2B01G162000.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	TIGR:cd16515
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:134998561..135003538

Molecular Weight (calculated)

37164.2 Da

IEP (calculated)

8.920

GRAVY (calculated)

-0.019

Length

341 amino acids

Sequence
(BLAST)

001: MLVPWGGVGC CLSAAALYLL GRSSGRDAEV LRSVARTGSL KDLAAILDTA SKVLPLVVAV SGRVSSDTPL ICQQSGMRGV IVEETAEQHF LKHNDAGSWI
101: QDSAVMLSVS KEVPWYLDDG TGRVYVVGAR SAAGLILTVA SEVFEESGRT LVRGTLDYLQ GLKMLGVKRT ERVLPTGTSL TVVGEAIKDD VGTIRIQRPH
201: KGPFYASPKS IDQLILNLGK WAKLYQLASM GFAAFGVFLL AKRALDHFLQ RKRQREFHKK ARAAAAQRQA RDAEGGNGTS DGEPKKDQLV LEICVICLEQ
301: EYNAVFVPCG HMCCCMNCSS HVTNCPLCRR RIDQAVRTFR H

Best Arabidopsis Sequence Match ( AT1G63900.1 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.