Factsheet for Bra027667.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018196.1-P
Bra018197.1-P
Bra022170.1-P
Bra032612.1-P
Bra033311.1-P
Bra033806.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63900.1	Bra032612.1-P	AT1G02280.1	23118188
AT1G63900.1	Bra033311.1-P	AT1G02280.1	23118188
AT1G63900.1	Bra022170.1-P	AT3G16620.1	23118188
AT1G63900.1	Bra018196.1-P	AT3G46740.1	23118188
AT1G63900.1	Bra018197.1-P	AT3G46740.1	23118188
AT1G63900.1	Bra033806.1-P	AT3G46740.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34384	Canola	endoplasmic reticulum, vacuole	99.71	99.71
CDY25541	Canola	endoplasmic reticulum, vacuole	98.25	98.83
AT1G63900.1	Thale cress	endoplasmic reticulum, golgi	91.84	91.84
KRH31972	Soybean	endoplasmic reticulum, golgi	75.22	76.11
KRH71471	Soybean	endoplasmic reticulum, golgi	75.22	76.11
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	74.34	74.34
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	74.05	74.27
EER99814	Sorghum	endoplasmic reticulum, golgi	70.55	70.55
Os07t0647800-01	Rice	endoplasmic reticulum	57.43	68.64
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	67.64	68.04
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	67.35	67.74
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	67.35	67.74
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	67.06	67.45
Solyc06g084360.2.1	Tomato	nucleus	73.47	66.14
Bra040424.1-P	Field mustard	endoplasmic reticulum, extracellular	56.85	56.03
Zm00001d007060_P003	Maize	extracellular, plasma membrane	58.89	49.75
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	9.33	48.48
Bra007725.1-P	Field mustard	plasma membrane	53.35	47.91
Bra016685.1-P	Field mustard	cytosol	15.74	30.0
Bra016684.1-P	Field mustard	plasma membrane, vacuole	20.99	25.17

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra027667	EnsemblPlants:Bra027667.1	EnsemblPlants:Bra027667.1-P
InterPro:GIDE	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006810	GO:GO:0006996	GO:GO:0008150
GO:GO:0008152	GO:GO:0009536	GO:GO:0009707	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:1904215	InterPro:IPR001841	InterPro:IPR013083
UniProt:M4EFV4	PFAM:PF12483	PFAM:PF13920	PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18
SUPFAM:SSF57850	SignalP:SignalP-noTM	UniParc:UPI0002542398	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT1G63900 (E=2e-172) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA09:-:7031440..7033314

Molecular Weight (calculated)

37813.7 Da

IEP (calculated)

8.031

GRAVY (calculated)

-0.102

Length

343 amino acids

Sequence
(BLAST)

001: MIHWGGVTCC LSAAALYLLG SSSGRDAEVL KTVTRVNQLK ELAQLLELDS SKLLPFIVAV SGRVGSDTPI KCEHSGIRGV IVEETAEQHF LKHNETGSWV
101: QDSALMLSMS KEVPWFLDDG TSRVNVVGAR GATGFALTVG SEVFEESGRS LVRGTLDYLQ GLKMLGVKRI ERVLPTGMPL TIVGEAVKDD IGDLRIQKPE
201: RGPFYVSPKS LDQLISNLGK WSRWYKYASM GLTVFGVFLI TKHVIDHVLE RRRHRELQKR VLDAAAKRAE ETEGSNGAHE SVSDSTKKEG AVPDLCVICL
301: EHNYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDQVVKT YRH

Best Arabidopsis Sequence Match ( AT1G63900.1 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.