Factsheet for AT1G63900.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 4
extracellular 3
vacuole 3
plasma membrane 3
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	91.84	91.84
CDY34384	Canola	endoplasmic reticulum, vacuole	91.84	91.84
CDY25541	Canola	endoplasmic reticulum, vacuole	90.96	91.5
KRH71471	Soybean	endoplasmic reticulum, golgi	75.51	76.4
KRH31972	Soybean	endoplasmic reticulum, golgi	75.22	76.11
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	73.47	73.68
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	73.47	73.47
EER99814	Sorghum	endoplasmic reticulum, golgi	70.85	70.85
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	67.93	68.33
Os07t0647800-01	Rice	endoplasmic reticulum	57.14	68.29
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	67.64	68.04
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	67.64	68.04
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	67.35	67.74
Solyc06g084360.2.1	Tomato	nucleus	72.89	65.62
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	56.27	57.1
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	9.91	51.52
Zm00001d007060_P003	Maize	extracellular, plasma membrane	59.48	50.25
AT1G14688.1	Thale cress	cytosol, mitochondrion, plasma membrane, plastid	11.66	23.53

Protein Annotations

MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10	EntrezGene:842693	ProteinID:AAG52446.1	ProteinID:AAG52461.1
ProteinID:AEE34164.1	EMBL:AK176213	EMBL:AK176755	ArrayExpress:AT1G63900	EnsemblPlantsGene:AT1G63900	RefSeq:AT1G63900
TAIR:AT1G63900	RefSeq:AT1G63900-TAIR-G	EnsemblPlants:AT1G63900.1	TAIR:AT1G63900.1	EMBL:AY128352	Unigene:At.22411
EMBL:BT000008	ncoils:Coil	Symbol:DAL1	EMBL:DQ059103	InterPro:GIDE	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006810	GO:GO:0006996	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009527	GO:GO:0009536	GO:GO:0009707	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	GO:GO:1904215	InterPro:IPR001841	InterPro:IPR013083	RefSeq:NP_176574.2	PFAM:PF12483
PFAM:PF13920	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18	UniProt:Q8L7N4	SUPFAM:SSF57850
SignalP:SignalP-noTM	UniParc:UPI00000AC103	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]

Coordinates

chr1:+:23716654..23719337

Molecular Weight (calculated)

37910.0 Da

IEP (calculated)

8.013

GRAVY (calculated)

-0.080

Length

343 amino acids

Sequence
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.