Factsheet for PGSC0003DMT400051847

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 3
cytosol 1
plastid 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004034
PGSC0003DMT400024781
PGSC0003DMT400078190

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63900.1	PGSC0003DMT400004034	AT3G16620.1	23118188
AT1G63900.1	PGSC0003DMT400024781	AT3G16620.1	23118188
AT1G63900.1	PGSC0003DMT400078190	AT3G46740.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g084360.2.1	Tomato	nucleus	97.66	87.66
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	82.16	81.92
KRH71471	Soybean	endoplasmic reticulum, golgi	79.24	79.94
KRH31972	Soybean	endoplasmic reticulum, golgi	78.36	79.06
CDY25541	Canola	endoplasmic reticulum, vacuole	74.56	74.78
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	74.27	74.05
CDY34384	Canola	endoplasmic reticulum, vacuole	74.27	74.05
AT1G63900.1	Thale cress	endoplasmic reticulum, golgi	73.68	73.47
EER99814	Sorghum	endoplasmic reticulum, golgi	71.93	71.72
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	71.05	71.26
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	71.05	71.26
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	71.05	71.26
Os07t0647800-01	Rice	endoplasmic reticulum	59.65	71.08
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	70.76	70.97
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	10.82	56.06
AT1G59560.1	Thale cress	endoplasmic reticulum, extracellular, golgi	51.46	52.07
Bra040424.1-P	Field mustard	endoplasmic reticulum, extracellular	52.05	51.15
CDX89169	Canola	extracellular	52.34	51.14
Zm00001d007060_P003	Maize	extracellular, plasma membrane	59.94	50.49
CDX93939	Canola	extracellular	50.88	49.43
Bra007725.1-P	Field mustard	plasma membrane	48.54	43.46
CDY63334	Canola	endoplasmic reticulum, extracellular	49.12	43.19

Protein Annotations

EntrezGene:102601282	MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10	InterPro:GIDE	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0006996	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841
InterPro:IPR013083	UniProt:M1BSB7	PFAM:PF12483	PFAM:PF13920	EnsemblPlantsGene:PGSC0003DMG402020120	PGSC:PGSC0003DMG402020120
EnsemblPlants:PGSC0003DMT400051847	PFscan:PS50089	PANTHER:PTHR12183	PANTHER:PTHR12183:SF18	SUPFAM:SSF57850	SignalP:SignalP-noTM
UniParc:UPI000294B85E	RefSeq:XP_006352786.1	RefSeq:XP_006352787.1	RefSeq:XP_006352788.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG402020120]

Coordinates

chr6:+:59172876..59180933

Molecular Weight (calculated)

38035.3 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.074

Length

342 amino acids

Sequence
(BLAST)

001: MVPWGGLSCC LSAAALYLLG RSSGRDAEVL KSVTRVNQLK DLAQLLDTAS KVLPLVVTIS GRVGSDTPIN CEYSGLRGVI VEETAEQHFL KHNDAGSWIQ
101: DSALMLSMCK EVPWYLDDDT GRTFVVGGRG ATGLVLTVGS EIFEEAGRSF VRGTLDYLQG LKMLGVKRIE RVLPVGTPLT VVGEAVKDDI GTVRIQRPHK
201: GPFYISHKTI DQLIANLGRW ARWYKYASMG FTAVGVYLLV KHTFHYMMER KRHWELRRRV LAAAAKRAGH EDEGSNATAE NGVDNKKDLL MPNLCVICLE
301: QEYNSVFVPC GHMCCCMTCS SHLTNCPLCR RRIEQVVKTF RH

Best Arabidopsis Sequence Match ( AT1G63900.1 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.