CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 4
extracellular 3
vacuole 4
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68401
CDX82997
CDX86093
CDX89987
CDX92086
CDX92087
CDX99099
CDY15228
CDY32453
CDY43117
CDY55323
CDY66172

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G63900.1	CDX89987	AT1G02280.1	23118188
AT1G63900.1	CDY15228	AT1G02280.1	23118188
AT1G63900.1	CDY32453	AT1G02280.1	23118188
AT1G63900.1	CDY55323	AT1G02280.1	23118188
AT1G63900.1	CDX92086	AT3G16620.1	23118188
AT1G63900.1	CDX92087	AT3G16620.1	23118188
AT1G63900.1	CDY43117	AT3G16620.1	23118188
AT1G63900.1	CDY66172	AT3G16620.1	23118188
AT1G63900.1	CDX68401	AT3G46740.1	23118188
AT1G63900.1	CDX82997	AT3G46740.1	23118188
AT1G63900.1	CDX86093	AT3G46740.1	23118188
AT1G63900.1	CDX99099	AT3G46740.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027667.1-P	Field mustard	endoplasmic reticulum, golgi	99.71	99.71
CDY25541	Canola	endoplasmic reticulum, vacuole	98.54	99.12
AT1G63900.1	Thale cress	endoplasmic reticulum, golgi	91.84	91.84
KRH71471	Soybean	endoplasmic reticulum, golgi	75.22	76.11
KRH31972	Soybean	endoplasmic reticulum, golgi	75.22	76.11
VIT_07s0104g00630.t01	Wine grape	plasma membrane, vacuole	74.34	74.34
PGSC0003DMT400051847	Potato	endoplasmic reticulum, golgi	74.05	74.27
EER99814	Sorghum	endoplasmic reticulum, golgi	70.55	70.55
Os07t0647800-01	Rice	endoplasmic reticulum	57.43	68.64
HORVU2Hr1G024550.6	Barley	endoplasmic reticulum, golgi	67.64	68.04
TraesCS2B01G162000.1	Wheat	endoplasmic reticulum, golgi	67.35	67.74
TraesCS2D01G141100.1	Wheat	endoplasmic reticulum, golgi	67.35	67.74
TraesCS2A01G138100.2	Wheat	endoplasmic reticulum, golgi	67.06	67.45
Solyc06g084360.2.1	Tomato	nucleus	73.47	66.14
CDX89169	Canola	extracellular	57.14	56.0
CDX93939	Canola	extracellular	57.14	55.68
Zm00001d007060_P003	Maize	extracellular, plasma membrane	58.89	49.75
GSMUA_Achr9P07520_001	Banana	cytosol, mitochondrion, plastid, vacuole	9.33	48.48
CDY63334	Canola	endoplasmic reticulum, extracellular	54.23	47.81
CDX70390	Canola	cytosol	18.37	34.43
CDY52033	Canola	cytosol	15.74	30.0
CDY52031	Canola	mitochondrion	21.87	28.3
CDX84016	Canola	extracellular, mitochondrion, plasma membrane, plastid	21.57	28.03
CDX84015	Canola	cytosol	4.08	21.21

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	MapMan:19.2.2.1.5.3.2	MapMan:19.2.5.1	Gene3D:3.30.40.10
GO:A0A078HA62	UniProt:A0A078HA62	EnsemblPlants:CDY34384	ProteinID:CDY34384	ProteinID:CDY34384.1	InterPro:GIDE
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0006996	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00056446001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF12483	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR12183	PANTHER:PTHR12183:SF18	SUPFAM:SSF57850	SignalP:SignalP-noTM	UniPathway:UPA00143	UniParc:UPI0004EEA033
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

BnaA09g11260DBnaA09g11260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HA62]

Coordinates

chrLK032333:+:241163..243586

Molecular Weight (calculated)

37854.8 Da

IEP (calculated)

8.031

GRAVY (calculated)

-0.110

Length

343 amino acids

Sequence
(BLAST)

001: MIHWGGVTCC LSAAALYLLG QSSGRDAEVL KTVTRVNQLK ELAQLLELDS SKLLPFIVAV SGRVGSDTPI KCEHSGIRGV IVEETAEQHF LKHNETGSWV
101: QDSALMLSMS KEVPWFLDDG TSRVNVVGAR GATGFALTVG SEVFEESGRS LVRGTLDYLQ GLKMLGVKRI ERVLPTGMPL TIVGEAVKDD IGDLRIQKPE
201: RGPFYVSPKS LDQLISNLGK WSRWYKYASM GLTVFGVFLI TKHVIDHVLE RRRHRELQKR VLDAAAKRAE ETEGSNGAHE SVSDSTKKEG AVPDLCVICL
301: EHNYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDQVVKT YRH

Best Arabidopsis Sequence Match ( AT1G63900.1 )
(BLAST)

001: MIPWGGVTCC LSAAALYLLG RSSGRDAEVL ETVTRVNQLK ELAQLLELDS KILPFIVAVS GRVGSETPIK CEHSGIRGVI VEETAEQHFL KHNETGSWVQ
101: DSALMLSMSK EVPWFLDDGT SRVHVMGARG ATGFALTVGS EVFEESGRSL VRGTLDYLQG LKMLGVKRIE RVLPTGIPLT IVGEAVKDDI GEFRIQKPDR
201: GPFYVSSKSL DQLISNLGKW SRLYKYASMG FTVLGVFLIT KHVIDSVLER RRRRQLQKRV LDAAAKRAEL ESEGSNGTRE SISDSTKKED AVPDLCVICL
301: EQEYNAVFVP CGHMCCCTAC SSHLTSCPLC RRRIDLAVKT YRH

Arabidopsis Description

SP1E3 ubiquitin-protein ligase SP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7N4]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.