Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G138100.2 | |
| TraesCS2B01G162000.1 | |
| TraesCS2D01G141100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G46740.1 | TraesCS2A01G138100.2 | AT1G63900.1 | 23118188 |
| AT3G46740.1 | TraesCS2B01G162000.1 | AT1G63900.1 | 23118188 |
| AT3G46740.1 | TraesCS2D01G141100.1 | AT1G63900.1 | 23118188 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G022900.2 | Barley | mitochondrion | 63.24 | 95.98 |
| TraesCS4A01G194000.1 | Wheat | plastid | 97.35 | 77.57 |
| GSMUA_Achr9P03840_001 | Banana | cytosol | 35.6 | 68.69 |
| GSMUA_Achr10P... | Banana | cytosol | 60.76 | 66.37 |
| CDX86093 | Canola | cytosol | 66.56 | 64.42 |
| CDX82997 | Canola | cytosol | 65.56 | 63.46 |
| Os11t0116500-01 | Rice | cytosol | 67.22 | 61.52 |
| KXG36538 | Sorghum | nucleus | 74.01 | 56.23 |
| CDX70592 | Canola | cytosol | 7.78 | 55.95 |
| TraesCS4D01G209900.1 | Wheat | plastid | 74.83 | 55.94 |
| AT1G35860.1 | Thale cress | nucleus | 35.76 | 54.14 |
| CDX99099 | Canola | cytosol, plastid | 66.56 | 54.1 |
| GSMUA_Achr9P03830_001 | Banana | cytosol | 12.25 | 52.48 |
| AT4G09080.2 | Thale cress | golgi | 35.1 | 52.09 |
| CDX78609 | Canola | extracellular | 12.58 | 50.67 |
| GSMUA_Achr6P15190_001 | Banana | mitochondrion | 59.93 | 49.66 |
| AT3G46740.1 | Thale cress | plastid | 66.72 | 49.27 |
| VIT_06s0004g05150.t01 | Wine grape | plastid | 65.89 | 49.26 |
| KRH10219 | Soybean | plastid | 64.74 | 49.24 |
| Bra033806.1-P | Field mustard | plastid | 66.06 | 49.14 |
| CDX81332 | Canola | mitochondrion | 27.81 | 48.84 |
| Bra018197.1-P | Field mustard | plastid | 66.39 | 48.72 |
| KRH23106 | Soybean | endoplasmic reticulum | 64.4 | 48.62 |
| Solyc06g076360.2.1 | Tomato | plastid | 63.74 | 47.41 |
| Bra002581.1-P | Field mustard | plastid | 60.1 | 45.78 |
| CDY33023 | Canola | plastid | 60.1 | 45.78 |
| PGSC0003DMT400078190 | Potato | plastid | 63.41 | 45.7 |
| CDX80294 | Canola | plastid | 59.6 | 44.5 |
| Bra006282.1-P | Field mustard | plasma membrane | 14.24 | 37.23 |
| CDX68401 | Canola | cytosol | 65.56 | 33.82 |
| Bra018196.1-P | Field mustard | plastid | 64.9 | 32.64 |
| TraesCS1D01G330700.3 | Wheat | cytosol, nucleus, plastid | 13.74 | 22.93 |
| TraesCS6D01G153700.1 | Wheat | golgi | 19.37 | 17.75 |
| GSMUA_Achr9P03850_001 | Banana | nucleus, peroxisome, plastid | 4.97 | 12.88 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G119300.1 | EnsemblPlantsGene:TraesCS4D01G119300 | Gene3D:2.40.160.50 | Gene3D:3.10.20.310 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0019867 | InterPro:Bac_surfAg_D15 | PANTHER:PTHR12815 | PANTHER:PTHR12815:SF14 | PFAM:PF01103 | SEG:seg |
| MapMan:23.1.2.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:100566693..100569884
Molecular Weight (calculated)
66137.4 Da
IEP (calculated)
6.699
GRAVY (calculated)
-0.369
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGVSVEAV RPQPDGTLGI TVSYAEALWP PAKRFSCVNV GGLLPAQADE VEDDDMTERE KIALRRRHER AYQQRLGRAK ACILPEPVRG EVVEMVRKQG
101: RVSARLLQRI RDCVQRWYHG EGFVCAQVIN FGNLDAGEVL CEVVEGEVTG VEYQFQDKLG NVVEGNTQLP VIDRELPQQL RPGHIFNIGA GKQALKNINA
201: LGLFSNIEVN PRPDETKEGG VVVEIKLKEQ DPKSADVETV WNFVPGDQGR PTLASIQPGG GVTFEHRNIC GLNRSLAGSF SSSNLLNPQD DVSFKLEYTH
301: PYLDGVEDRS RNRIFKASCF NTKKLSPVFV AGPNMDDAPP IWVDRVGIKA NITENLTKQS KFTYGLVLEE ITTRDESNDV CTHGLRTKAT GALGMDGPPT
401: TFSGTGVDRM AFLHANVTRD NTEFVNGETI GDRCIFQVDQ GLGIGSRNPF FNRHQLTVTK FVNLNKQEKG AGKPPPAVLV AHGRYAGCVG DLPSYDAFAL
501: GGPHSVRGYG MGELGACRNL LEVATEVRIP VPVMKNTHVY AFAEHGTDLG SSKDVKGNPT EFFRRAGQGS SYGVGVRLGP LRAEYAVDHN AGTGSVFFRY
601: GDRF
101: RVSARLLQRI RDCVQRWYHG EGFVCAQVIN FGNLDAGEVL CEVVEGEVTG VEYQFQDKLG NVVEGNTQLP VIDRELPQQL RPGHIFNIGA GKQALKNINA
201: LGLFSNIEVN PRPDETKEGG VVVEIKLKEQ DPKSADVETV WNFVPGDQGR PTLASIQPGG GVTFEHRNIC GLNRSLAGSF SSSNLLNPQD DVSFKLEYTH
301: PYLDGVEDRS RNRIFKASCF NTKKLSPVFV AGPNMDDAPP IWVDRVGIKA NITENLTKQS KFTYGLVLEE ITTRDESNDV CTHGLRTKAT GALGMDGPPT
401: TFSGTGVDRM AFLHANVTRD NTEFVNGETI GDRCIFQVDQ GLGIGSRNPF FNRHQLTVTK FVNLNKQEKG AGKPPPAVLV AHGRYAGCVG DLPSYDAFAL
501: GGPHSVRGYG MGELGACRNL LEVATEVRIP VPVMKNTHVY AFAEHGTDLG SSKDVKGNPT EFFRRAGQGS SYGVGVRLGP LRAEYAVDHN AGTGSVFFRY
601: GDRF
001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
Arabidopsis Description
TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.