Factsheet for TraesCS6D01G153700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G158800.1	Wheat	plastid	95.9	96.19
TraesCS6B01G192500.1	Wheat	mitochondrion	95.14	95.14
HORVU6Hr1G033430.4	Barley	cytosol	79.82	94.95
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	83.76	87.76
EES06452	Sorghum	mitochondrion	83.31	83.31
Zm00001d053664_P001	Maize	plastid	81.94	82.19
Zm00001d015837_P001	Maize	plastid	81.34	81.09
CDX92514	Canola	cytosol	45.22	76.61
GSMUA_Achr9P19020_001	Banana	plastid	74.36	73.57
VIT_06s0004g01880.t01	Wine grape	plastid	68.74	67.31
KRH10192	Soybean	plastid	68.89	67.06
KRH23145	Soybean	cytosol, nucleus, plastid	69.35	66.72
Solyc11g062070.1.1	Tomato	plastid	67.37	63.61
Solyc10g079290.1.1	Tomato	plastid	66.31	62.25
CDY58968	Canola	nucleus, plastid	68.29	61.56
Bra002250.1-P	Field mustard	cytosol, plastid	67.83	60.82
AT5G19620.1	Thale cress	plastid	66.92	60.25
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	63.58	59.86
CDX92515	Canola	nucleus, plastid	37.33	51.46
TraesCS1D01G330700.3	Wheat	cytosol, nucleus, plastid	18.36	33.43
TraesCS4D01G119300.1	Wheat	cytosol	17.75	19.37
TraesCS4D01G209900.1	Wheat	plastid	18.51	15.1

Protein Annotations

Gene3D:2.40.160.50	Gene3D:3.10.20.310	MapMan:35.1	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043
GO:GO:0019867	InterPro:IPR034746	PFAM:PF01103	PFAM:PF07244	InterPro:POTRA	PFscan:PS51779
PANTHER:PTHR12815	PANTHER:PTHR12815:SF32	EnsemblPlantsGene:TraesCS6D01G153700	EnsemblPlants:TraesCS6D01G153700.1	SEG:seg	:

Description

No Description!

Coordinates

chr6D:+:128084183..128095426

Molecular Weight (calculated)

71143.5 Da

IEP (calculated)

9.132

GRAVY (calculated)

-0.354

Length

659 amino acids

Sequence
(BLAST)

001: MGPRRDGVRF ISSGVKLPRA SPAPAPAHAL LSAALPPFAH IGRAIDAAAR RVAASFPRVP AARAESPTAP LPRRHGKDGG GAGGEERVLI SEVAVRGKDG
101: EPLERPELEE AAAGALRACR PNAALTVREV QEDVHRVVES GLFRSCMPVA VDTRDGIRLV FEVEPNQDFH GLVCEGANML PSKFLDDSFR DRHGKIINIR
201: HLDQVIKSIN GWYQERGLTG MVSYAEILSG GILRLQVSEA EVNNINIRFL DRRTGEPTIG KTKPETILQQ LTTKKGQAYN RAQVKRDVET ILTMGIMEDV
301: TIIPQPVGDS NKVDLVMNLV ERKSGGFSAG GGISSGITNG PLSGLIGSFA YSQRNVFGRN KKLNLSLERG QIDSIFRLNY TDPWIDGDNK RTSRTVMVQN
401: SRTPGTLIHG GEHPDHSPIT IGRVTAGIEY SRPFRPKWSG TLGLIFQHAG ARDDKGNPMI RDFYNSQLTA SGNPYDDTLL AKLESVYTDS GDQSSTMFVF
501: NVEQGLPILP EWLSFNRVTA RLRQSYEIGP ARLLLSASGG HVEGNFSPHE AFAIGGTNSV RGYEEGAVGS GRSYAVGSGE VSCRLFGPLE GVVFGDYGSD
601: LGSGPTVPGD PAGARGKPGS GYGYGVGIRV DSPLGPLRLE YAFNDKQARR FHFGVGHRN

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.