CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053664_P001	Maize	plastid	94.54	94.83
Zm00001d015837_P001	Maize	plastid	92.87	92.59
HORVU6Hr1G033430.4	Barley	cytosol	75.27	89.53
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	83.92	87.92
TraesCS6A01G158800.1	Wheat	plastid	83.61	83.87
TraesCS6B01G192500.1	Wheat	mitochondrion	83.76	83.76
TraesCS6D01G153700.1	Wheat	golgi	83.31	83.31
CDX92514	Canola	cytosol	45.68	77.38
GSMUA_Achr9P19020_001	Banana	plastid	71.78	71.02
VIT_06s0004g01880.t01	Wine grape	plastid	68.59	67.16
KRH10192	Soybean	plastid	67.98	66.17
KRH23145	Soybean	cytosol, nucleus, plastid	67.98	65.4
CDY58968	Canola	nucleus, plastid	69.65	62.79
Solyc11g062070.1.1	Tomato	plastid	66.31	62.61
Solyc10g079290.1.1	Tomato	plastid	66.46	62.39
Bra002250.1-P	Field mustard	cytosol, plastid	69.04	61.9
AT5G19620.1	Thale cress	plastid	68.29	61.48
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	63.73	60.0
CDX92515	Canola	nucleus, plastid	38.85	53.56
EES18465	Sorghum	cytosol	18.66	30.67
KXG36538	Sorghum	nucleus	18.66	15.47
EER95112	Sorghum	plastid	19.42	15.06

Protein Annotations

Gene3D:2.40.160.50	Gene3D:3.10.20.310	MapMan:35.1	EntrezGene:8071634	InterPro:Bac_surfAg_D15	InterPro:BamA/TamA_POTRA
UniProt:C5XXH2	EnsemblPlants:EES06452	ProteinID:EES06452	ProteinID:EES06452.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019867
InterPro:IPR034746	PFAM:PF01103	PFAM:PF07244	InterPro:POTRA	PFscan:PS51779	PANTHER:PTHR12815
PANTHER:PTHR12815:SF32	EnsemblPlantsGene:SORBI_3004G079800	unigene:Sbi.410	UniParc:UPI0001A85C5A	RefSeq:XP_002453476.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:6552151..6559798

Molecular Weight (calculated)

70858.2 Da

IEP (calculated)

8.826

GRAVY (calculated)

-0.299

Length

659 amino acids

Sequence
(BLAST)

001: MGRRPDVRFV SSGVKLPSAP ASAPSPAPAP ALLSAALPFA HIGRAIDAAA RRLGSCLPRV PVARADPAAP PPLARRHGKD GGGPEERVLI SEVAVRGKDG
101: EPLERAELEA AAAAALRACR PNAALTVREV QEDVHRIVES GLFRSCMPVA VDTRDGIRLV FEVEPNQDFH GLVCEGANML PSKFLEDAFR DRHGKIINIR
201: HLDKVIKSVN GWYQERGLTG LVSYAEILSG GVLRLQVSEA EVNNISIRFL DRKTGEPTLG KTQPETILRQ LTTKKGQAYN RAQVKRDVET ILTMGIMEDV
301: TIIPQPVGDS NKVDLVMNLV ERPSGGFSAG GGISSGITNG PLSGLIGSFA YSHRNVFGRN KKLNLSLERG QIDSIFRLNF TDPWIDGDNK RTSRTVMVQN
401: SRTPGTLVHG GDHPDHGPIT IGRVTAGLEY SRPFRPKWSG TLGLIFQHAG ARDDKGSPVI RDFYNSQLTA SGHDYDDTLL AKFESVYTDS GDHSSTMFVF
501: NIEQGLPVLP EWLSFNRVTA RLRQGYEIGP ARLLLSASGG HVEGNFPPHE AFAIGGTNSV RGYEEGAVGS GRSYAVGSGE VSCRLFGPLE GVIFGDYGSD
601: LGSGPKVPGD PAGARGKPGS GYGYGVGVRV DSPLGPLRLE YAFNDKQASR FHFGVGYRN

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.