CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER99814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46740.1	EER99814	AT1G63900.1	23118188

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028586_P001	Maize	plastid	97.06	96.83
Zm00001d047828_P001	Maize	plasma membrane	96.0	95.66
Os03t0271200-01	Rice	plastid	82.24	85.56
TraesCS4B01G209200.1	Wheat	plastid, unclear	81.18	85.19
TraesCS4A01G095300.1	Wheat	golgi, plastid	81.06	85.17
HORVU4Hr1G060190.1	Barley	plastid	81.06	84.96
TraesCS4D01G209900.1	Wheat	plastid	80.71	84.9
GSMUA_Achr9P03840_001	Banana	cytosol	29.18	79.23
GSMUA_Achr10P...	Banana	cytosol	50.12	77.03
CDX86093	Canola	cytosol	53.65	73.08
CDX82997	Canola	cytosol	52.94	72.12
GSMUA_Achr9P03830_001	Banana	cytosol	11.65	70.21
CDX99099	Canola	cytosol, plastid	59.41	67.97
KXG36538	Sorghum	nucleus	61.53	65.79
GSMUA_Achr6P15190_001	Banana	mitochondrion	55.41	64.61
VIT_06s0004g05150.t01	Wine grape	plastid	61.06	64.23
KRH10219	Soybean	plastid	59.65	63.85
Solyc06g076360.2.1	Tomato	plastid	60.12	62.93
KRH23106	Soybean	endoplasmic reticulum	58.94	62.62
AT3G46740.1	Thale cress	plastid	60.12	62.47
Bra033806.1-P	Field mustard	plastid	59.53	62.32
Bra018197.1-P	Field mustard	plastid	60.0	61.97
PGSC0003DMT400078190	Potato	plastid	59.41	60.26
AT1G35860.1	Thale cress	nucleus	27.53	58.65
Bra002581.1-P	Field mustard	plastid	53.88	57.76
CDY33023	Canola	plastid	53.65	57.5
CDX70592	Canola	cytosol	5.65	57.14
CDX81332	Canola	mitochondrion	23.06	56.98
CDX80294	Canola	plastid	54.0	56.74
CDX78609	Canola	extracellular	10.0	56.67
AT4G09080.2	Thale cress	golgi	26.47	55.28
Bra006282.1-P	Field mustard	plasma membrane	12.0	44.16
Bra018196.1-P	Field mustard	plastid	58.82	41.63
CDX68401	Canola	cytosol	52.94	38.43
EES18465	Sorghum	cytosol	9.53	20.2
EES06452	Sorghum	mitochondrion	15.06	19.42
GSMUA_Achr9P03850_001	Banana	nucleus, peroxisome, plastid	3.65	13.3

Protein Annotations

Gene3D:2.40.160.50	MapMan:23.1.2.1	Gene3D:3.10.20.310	EntrezGene:8081517	InterPro:Bac_surfAg_D15	UniProt:C5WQ18
EnsemblPlants:EER95112	ProteinID:EER95112	ProteinID:EER95112.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015450
GO:GO:0016020	GO:GO:0019867	PFAM:PF01103	PANTHER:PTHR12815	PANTHER:PTHR12815:SF14	EnsemblPlantsGene:SORBI_3001G423300
unigene:Sbi.6437	UniParc:UPI0001A8313B	RefSeq:XP_002468114.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:70372952..70378115

Molecular Weight (calculated)

91370.4 Da

IEP (calculated)

8.209

GRAVY (calculated)

-0.296

Length

850 amino acids

Sequence
(BLAST)

001: MALTSQGITL RSPPAGPRGH GGRRSSSVPA AAVPRGWGQH HAGQALSISP ARYEPAARPP RGGSSSSAIR AAASAGAQPG SDPVPAEPRI ELPAIFTVFS
101: EAAKTGAAFF IASSGAAFLL GSFGGFGGGA GGLFGGGGGG GGWGAGGAGG GGGGDFLSRL FSVGAAHADD KSSGDWDAHG LPVNMTVPLT KLSGLKRYKL
201: SELKFFDRAA AGGGAYTGPE DSFFEMVTLQ PGGVYTKSQL LKELETLVSC GMFERVDLEV KPKPDNTIGL TVSFVESVWS AAKQFKCINV GLMSQSGQVD
301: FDQDMTEREK MDYLRKQERD YQQRVRGAKP CILPENVRGE VLGMMKKQEK VSARMLQKIR DHVQKWYHNE GFVCAQVVNF GNLNTNEVVC EVVEGDITKV
401: EYQFQDKLGN IVEGNTQLPI IDRELPQQLR PGHIFNIGAG KQALKNINSL ALFSNIEVNP RPDETKEGGI VVEIKLKELE PKSAEVSTEW SIVPGREGRP
501: TLASIQPGGT VSFEHRNIYG LNRSIVGSVT SSNLLNPQDD LSFKLEYVHP YLDGVDDRSK NRTFKTSCFN TRKLSPVFVA GPNMDEAPPV WIDRVGFKAN
601: ITESFTRQSK FTYGLVVEEI TTRDETNSIC THGSRAMPSG GLSMDGPPTT LSGTGVDRMA FLQANITRDN TEFVNGAIVG DRYIFQLDQG LGIGSKNPFF
701: NRHQLTLTKF INLNKQEKGA GKPLPAVLVL HGHYAGCVGD LPSYDAFALG GPYSVRGFSN GELGASRNIL EVATELRIPV RNTHVYAFAE HGTDLGSSKD
801: VKGNPTEFFR RVGHGSSYGV GVKLGLVRGE YIVDHNAGTG TIFFRFGERF

Best Arabidopsis Sequence Match ( AT3G46740.1 )
(BLAST)

001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY

Arabidopsis Description

TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.