Factsheet for VIT_06s0004g01880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92514	Canola	cytosol	47.4	82.01
HORVU6Hr1G033430.4	Barley	cytosol	60.62	73.65
KRH10192	Soybean	plastid	72.96	72.53
GSMUA_Achr9P19020_001	Banana	plastid	71.17	71.92
KRH23145	Soybean	cytosol, nucleus, plastid	72.96	71.68
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	65.82	70.43
TraesCS6B01G192500.1	Wheat	mitochondrion	67.9	69.35
TraesCS6A01G158800.1	Wheat	plastid	67.31	68.95
TraesCS6D01G153700.1	Wheat	golgi	67.31	68.74
Zm00001d053664_P001	Maize	plastid	67.01	68.65
EES06452	Sorghum	mitochondrion	67.16	68.59
Bra002250.1-P	Field mustard	cytosol, plastid	74.44	68.16
Solyc10g079290.1.1	Tomato	plastid	70.73	67.81
CDY58968	Canola	nucleus, plastid	73.55	67.72
Solyc11g062070.1.1	Tomato	plastid	69.69	67.19
Zm00001d015837_P001	Maize	plastid	65.97	67.17
AT5G19620.1	Thale cress	plastid	72.66	66.8
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	67.46	64.86
CDX92515	Canola	nucleus, plastid	42.35	59.62
VIT_06s0009g00240.t01	Wine grape	cytosol	20.8	38.89
VIT_06s0004g05150.t01	Wine grape	plastid	18.28	15.22

Protein Annotations

EntrezGene:100255222	wikigene:100255222	Gene3D:2.40.160.50	Gene3D:3.10.20.310	MapMan:35.1	EMBL:AM474235
InterPro:Bac_surfAg_D15	ProteinID:CAN79412	ProteinID:CAN79412.1	ProteinID:CCB43722	ProteinID:CCB43722.1	ncoils:Coil
UniProt:F6GU80	EMBL:FN594951	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009658	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019867	EntrezGene:LOC100255222	wikigene:LOC100255222
PFAM:PF01103	PANTHER:PTHR12815	PANTHER:PTHR12815:SF32	TIGR:TC59994	UniParc:UPI000210865C	ArrayExpress:VIT_06s0004g01880
EnsemblPlantsGene:VIT_06s0004g01880	EnsemblPlants:VIT_06s0004g01880.t01	unigene:Vvi.9660	RefSeq:XP_002285507	RefSeq:XP_002285507.2	SEG:seg

Description

No Description!

Coordinates

chr6:-:2311829..2335187

Molecular Weight (calculated)

73216.9 Da

IEP (calculated)

7.134

GRAVY (calculated)

-0.249

Length

673 amino acids

Sequence
(BLAST)

001: MSKNEDVRFT SSSLKIPLSP PSFFSQTLGS HLTEATKSVI HLVNSFRNFR KPLNFLARPS PLLCSASLSL SQPAESTQLE VAATQPKGQT VARHPREDEE
101: RVLISEVLVR NKDGEELERK DLEAEAVAAL KACRPNSALT VREVQEDVHR IIDSGLFWSC MPVAVDTRDG IRLVFQVEPN QEFQGLVCEG ANVLPSKFLE
201: DAFRDGYGKV VNIRRLDDVI TSINDWYNER GLFGMVSGVE ILSGGIIRLK VSEAEVNDIS VRFLDRKTGE PTIGKTKPET ILRQLTTKKG QVYSLIQGKR
301: DAETVLTMGI MEDVSIIHQS VGDRDKIDLV MNVVERVSGG FSAGGGISRG ITTSRPLSGL IGSFAYSHRN VFGRNQKLNV SLERGQVDSI FRINYTDPWI
401: EGDDKRTSRS IMIQNSRTPG ILVHGGQPAN SSLTIGRVTA GIEFSRPFRP NWSGTVGLIF QHAGAHDEHG KPIIKDFYSS PLTASGNTHD DALLAKFESV
501: YTGSGDHGSS MFVFNMEQGL PVLPEWLFFN RVNARARKGV EIGPACLLLS LSGGHVVGNF SPHEAFAIGG TNSVRGYEEG AVGSGRSHVV GSGEISFPLY
601: GPLGGALFAD YGTDLGSGPT VPGDPAGARL KPGSGYGYGF GIRLDSPLGP LRLEYAFNDQ QAQRFHFGVG HRN

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.