Factsheet for Solyc10g079290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
mitochondrion 1
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	93.3	93.57
Solyc11g062070.1.1	Tomato	plastid	88.18	88.68
CDX92514	Canola	cytosol	43.16	77.89
VIT_06s0004g01880.t01	Wine grape	plastid	67.81	70.73
HORVU6Hr1G033430.4	Barley	cytosol	55.7	70.58
KRH10192	Soybean	plastid	66.67	69.13
KRH23145	Soybean	cytosol, nucleus, plastid	66.95	68.61
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	61.25	68.36
GSMUA_Achr9P19020_001	Banana	plastid	64.53	68.02
TraesCS6A01G158800.1	Wheat	plastid	62.25	66.51
EES06452	Sorghum	mitochondrion	62.39	66.46
TraesCS6D01G153700.1	Wheat	golgi	62.25	66.31
Zm00001d053664_P001	Maize	plastid	61.97	66.21
TraesCS6B01G192500.1	Wheat	mitochondrion	62.11	66.16
CDY58968	Canola	nucleus, plastid	68.09	65.39
Bra002250.1-P	Field mustard	cytosol, plastid	68.09	65.03
Zm00001d015837_P001	Maize	plastid	60.97	64.75
AT5G19620.1	Thale cress	plastid	67.24	64.48
CDX92515	Canola	nucleus, plastid	39.74	58.37
Solyc11g071890.1.1	Tomato	cytosol, golgi, nucleus	19.09	37.22
Solyc06g076360.2.1	Tomato	plastid	18.23	15.76

Protein Annotations

EnsemblPlants:Solyc10g079290.1.1	EnsemblPlantsGene:Solyc10g079290.1	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:GO:0005575	GO:GO:0016020
GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:IPR034746	InterPro:POTRA	ncoils:Coil	PANTHER:PTHR12815
PANTHER:PTHR12815:SF32	PFAM:PF01103	PFscan:PS51779	SEG:seg	UniParc:UPI000276A6F8	UniProt:K4D2H0
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:60841357..60847719

Molecular Weight (calculated)

76404.3 Da

IEP (calculated)

7.955

GRAVY (calculated)

-0.227

Length

702 amino acids

Sequence
(BLAST)

001: MLQNEDVRFT SSSIKLPLFS PPPLHHHTPN PFFANLHLVV QNFPKFPHPF CQNLNPRAAF LRTLSKFQHP FHQKFNPQNA ILQFLRKPII PFPWKLSNTS
101: PLLCCASIAL SQSNLDDSAP SLGTKTGSGN EERVLISEVL VRSKDGEELE RKDLENEVLN ALKACRPNSA LTVQEVQEDV HRIIASGYFC SCMPVAVDTR
201: DGIRLVFQVE PNQEFHGLVC EGANVLPAKF IEDSFRDGYG KIVNIKRIDE IISSINGWYM ERGLFGAVSG VEMLSGGMIR LEVSEAEVNN IAIRFLDKTG
301: EPTVGKTRPE TILRQLTTKK GQVYSMLQGK RDVETVLAMG IMEDVSIIPQ PSGDTGKVDL VMNVVERKSG AGISAGGGIS SGITSGPLAG LIGSCAIYHK
401: NLFGRNQKLN LSLERGQVDS VFRINYTDPW IEGDDKRTSR SIMIQNSRTP GTLVHNQPDG SLTIGRVTAG IEYSRPFRPK WNGTAGIIFQ RAGARDDKGS
501: PIIRDYYSSP LTASGNTHDD MLLAKLETVY TGSGDPGSSV FVFNMDQGLP VWSDWLVFNR VNARARKGLA LGPMHLLLSF SGGHVVGNFP PHEAFAIGGT
601: NSVRGYEEGA VGSSRSYVVG CGEISFPLTG PVEGAVFADY GSDLGSGPSV PGDPAGPRRK PGSGYGCGVG IRVDSPLGPL RLEYAFNDQR TGRFHFGVGL
701: RN

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.