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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 2
  • cytosol 1
  • plastid 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, nucleus
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400007724 Potato cytosol 95.83 95.83
VIT_06s0009g00240.t01 Wine grape cytosol 77.22 77.22
KRH22619 Soybean cytosol 76.94 76.94
CDY55302 Canola cytosol, peroxisome 53.61 75.39
KRH26702 Soybean cytosol 75.28 75.28
AT3G44160.1 Thale cress cytosol 73.06 72.65
CDX87938 Canola cytosol 71.67 72.27
Bra034992.1-P Field mustard cytosol 72.78 71.98
Zm00001d000311_P003 Maize cytosol 61.94 61.77
Os05t0510200-01 Rice cytosol, nucleus, plasma membrane 61.39 61.22
GSMUA_Achr6P31130_001 Banana cytosol 61.11 61.11
TraesCS1B01G342000.1 Wheat cytosol, nucleus, plastid 59.17 58.84
TraesCS1D01G330700.3 Wheat cytosol, nucleus, plastid 59.17 58.84
TraesCS1A01G328200.1 Wheat plastid 55.28 58.7
GSMUA_Achr9P10370_001 Banana cytosol 58.61 58.61
EES18465 Sorghum cytosol 60.28 54.11
AT3G48620.1 Thale cress extracellular 46.11 51.71
HORVU1Hr1G077770.9 Barley plastid 55.83 47.74
Solyc11g062070.1.1 Tomato plastid 37.22 19.2
Solyc10g079290.1.1 Tomato plastid 37.22 19.09
Solyc06g076360.2.1 Tomato plastid 20.56 9.11
Protein Annotations
EnsemblPlants:Solyc11g071890.1.1EnsemblPlantsGene:Solyc11g071890.1Gene3D:2.40.160.50GO:GO:0005575GO:GO:0016020GO:GO:0019867
InterPro:Bac_surfAg_D15PANTHER:PTHR12815PANTHER:PTHR12815:SF10PFAM:PF01103UniParc:UPI000276998BUniProt:K4DAP6
MapMan:19.2.5.2:::::
Description
No Description!
Coordinates
chr11:-:55218394..55226567
Molecular Weight (calculated)
38911.5 Da
IEP (calculated)
9.630
GRAVY (calculated)
-0.113
Length
360 amino acids
Sequence
(BLAST)
001: MLAKKSVRAG KAKIDVNVDF THKLCAALML QPFRNSGSPL ELVIGSLCIK HPNLFGKSEK LDVLWDKGLY DSNILITYRK PRPEWLAQQS FVVQHSISPE
101: IGVHGLPDDN FSRSGSGGVN LSRLSAGLDL SEPASSNWSS KTSIKFEHIR PVSDEGRSIN RDTHGFPVTC SGGYNDSMVV VKQESRYAKA NDRSFSQFSL
201: QIEQGVPILS KWLIFNRFKF VASRGLKLGP AFLLSSLTGG SIVGDIAPYQ AFAIGGLGSV RGYGEGAVGC GRSCLVANNE LTFPLSQVLD GAVFLDCGSD
301: LGSGRHVPGN PALRLGKPGN GIGFGYGLRF KSQLGHFQVD YAVNAFQQRT VYFGFSNLPS
Best Arabidopsis Sequence Match ( AT3G44160.1 )
(BLAST)
001: MGAQKSIHAG RAKIDVNVDF THKLCTSLMF PAFRDTSSPL SLVIGSLCIK HPNLFGGSEK LDVSWDKGLY DSNVLVAFRR PRPEWRPQQC FFIQHSLSPE
101: IGVHGTPVDN FSRSGSGGVN LSKLALGLDL SEPASSKWSS TTSIKFEHVR PINDDGRAIT RDLDGFPITC SGNTHDSMVV LKQESRFAKA TDQGLSHFSM
201: QIEQGIPVVS KWLIFNRFKF VASKGVRFGP AFLLASLTGG SIVGDMAPYQ AFAIGGLGSV RGYGEGAVGS GRSCLVANTE LALPLNKMTE GTIFLDCGTD
301: LGSSRLVPGN PSMRQGKPGF GYGFGYGLRF KSPLGHLQVD YAINAFNQKT LYFGVTNLAS ST
Arabidopsis Description
At3g44160 [Source:UniProtKB/TrEMBL;Acc:Q5PP51]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.