CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87938	Canola	cytosol	99.22	71.15
Bra034992.1-P	Field mustard	cytosol	99.61	70.05
AT3G44160.1	Thale cress	cytosol	95.7	67.68
AT3G48620.1	Thale cress	extracellular	82.42	65.73
KRH26702	Soybean	cytosol	79.69	56.67
KRH22619	Soybean	cytosol	78.52	55.83
VIT_06s0009g00240.t01	Wine grape	cytosol	78.12	55.56
PGSC0003DMT400007724	Potato	cytosol	77.73	55.28
Solyc11g071890.1.1	Tomato	cytosol, golgi, nucleus	75.39	53.61
GSMUA_Achr6P31130_001	Banana	cytosol	68.75	48.89
TraesCS1A01G328200.1	Wheat	plastid	62.89	47.49
GSMUA_Achr9P10370_001	Banana	cytosol	66.41	47.22
Zm00001d000311_P003	Maize	cytosol	65.62	46.54
Os05t0510200-01	Rice	cytosol, nucleus, plasma membrane	63.67	45.15
TraesCS1D01G330700.3	Wheat	cytosol, nucleus, plastid	62.89	44.48
TraesCS1B01G342000.1	Wheat	cytosol, nucleus, plastid	62.89	44.48
EES18465	Sorghum	cytosol	61.72	39.4
HORVU1Hr1G077770.9	Barley	plastid	62.11	37.77
CDX92514	Canola	cytosol	41.41	27.25
CDY58968	Canola	nucleus, plastid	41.8	14.64
CDX81332	Canola	mitochondrion	16.8	12.5
CDX82997	Canola	cytosol	26.56	10.9
CDX86093	Canola	cytosol	26.17	10.74
CDX99099	Canola	cytosol, plastid	26.17	9.02
CDY33023	Canola	plastid	26.95	8.7
CDX80294	Canola	plastid	26.95	8.53
CDX68401	Canola	cytosol	26.56	5.81
CDX70592	Canola	cytosol	1.17	3.57
CDX78609	Canola	extracellular	0.78	1.33
CDX92515	Canola	nucleus, plastid	0.39	0.21

Protein Annotations

EnsemblPlants:CDY55302	EnsemblPlantsGene:GSBRNA2T00016658001	Gene3D:2.40.160.50	GO:A0A078IY81	GO:GO:0005575	GO:GO:0016020
GO:GO:0019867	InterPro:Bac_surfAg_D15	PANTHER:PTHR12815	PANTHER:PTHR12815:SF10	PFAM:PF01103	ProteinID:CDY55302
ProteinID:CDY55302.1	SEG:seg	UniParc:UPI0004EE17B9	UniProt:A0A078IY81	MapMan:19.2.5.2	:

Description

BnaA06g38920DBnaA06g38920D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078IY81]

Coordinates

chrLK033392:-:60874..62516

Molecular Weight (calculated)

27027.2 Da

IEP (calculated)

9.097

GRAVY (calculated)

-0.020

Length

256 amino acids

Sequence
(BLAST)

001: HSLSPEIGVH GTPYDNFSRS GSGGVNLSKL AVGLDLSEPA SSKWSSTTSV KFEHVHVDGF PVTCSGNTHD SMVVLKQESR FAKANDQGLS HFSMQIEQGI
101: PVVSKWLIFN RFKFVASKGV RLGPAFLLAS LTGGSIVGDM APYQAFAIGG LGSVRGYGEG AVGSGRSCLV ANTELALPLN KMTEGTIFLD CGTDLGSSRL
201: VPGNPSLRHG KPGFGYGFGY GLRFKSPLGH LQVDYAINAF NQKTLYFGVT NLASSS

Best Arabidopsis Sequence Match ( AT3G44160.1 )
(BLAST)

001: MGAQKSIHAG RAKIDVNVDF THKLCTSLMF PAFRDTSSPL SLVIGSLCIK HPNLFGGSEK LDVSWDKGLY DSNVLVAFRR PRPEWRPQQC FFIQHSLSPE
101: IGVHGTPVDN FSRSGSGGVN LSKLALGLDL SEPASSKWSS TTSIKFEHVR PINDDGRAIT RDLDGFPITC SGNTHDSMVV LKQESRFAKA TDQGLSHFSM
201: QIEQGIPVVS KWLIFNRFKF VASKGVRFGP AFLLASLTGG SIVGDMAPYQ AFAIGGLGSV RGYGEGAVGS GRSCLVANTE LALPLNKMTE GTIFLDCGTD
301: LGSSRLVPGN PSMRQGKPGF GYGFGYGLRF KSPLGHLQVD YAINAFNQKT LYFGVTNLAS ST

Arabidopsis Description

At3g44160 [Source:UniProtKB/TrEMBL;Acc:Q5PP51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.