CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002250.1-P	Field mustard	cytosol, plastid	91.63	59.59
CDY58968	Canola	nucleus, plastid	86.61	56.63
AT5G19620.1	Thale cress	plastid	81.59	53.28
HORVU6Hr1G033430.4	Barley	cytosol	50.21	43.32
VIT_06s0004g01880.t01	Wine grape	plastid	59.62	42.35
KRH10192	Soybean	plastid	58.58	41.36
KRH23145	Soybean	cytosol, nucleus, plastid	58.79	41.02
Solyc11g062070.1.1	Tomato	plastid	58.16	39.83
Solyc10g079290.1.1	Tomato	plastid	58.37	39.74
GSMUA_Achr9P19020_001	Banana	plastid	54.39	39.04
Zm00001d053664_P001	Maize	plastid	53.56	38.97
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	51.26	38.95
EES06452	Sorghum	mitochondrion	53.56	38.85
Zm00001d015837_P001	Maize	plastid	52.72	38.12
TraesCS6B01G192500.1	Wheat	mitochondrion	51.67	37.48
TraesCS6D01G153700.1	Wheat	golgi	51.46	37.33
TraesCS6A01G158800.1	Wheat	plastid	51.26	37.29
PGSC0003DMT400021030	Potato	cytosol, nucleus, peroxisome, plastid	54.6	37.29
CDX92514	Canola	cytosol	25.52	31.36
CDX78609	Canola	extracellular	5.23	16.67
CDX70592	Canola	cytosol	2.3	13.1
CDX86093	Canola	cytosol	12.55	9.62
CDX82997	Canola	cytosol	12.34	9.46
CDX99099	Canola	cytosol, plastid	13.81	8.88
CDX80294	Canola	plastid	13.81	8.16
CDX81332	Canola	mitochondrion	5.86	8.14
CDY33023	Canola	plastid	13.18	7.94
CDX87938	Canola	cytosol	4.6	6.16
CDX68401	Canola	cytosol	12.34	5.04
CDY55302	Canola	cytosol, peroxisome	0.21	0.39

Protein Annotations

EnsemblPlants:CDX92515	EnsemblPlantsGene:GSBRNA2T00154294001	Gene3D:2.40.160.50	Gene3D:3.10.20.310	GO:A0A078DT55	GO:GO:0005575
GO:GO:0016020	GO:GO:0019867	InterPro:Bac_surfAg_D15	InterPro:IPR034746	InterPro:POTRA	PANTHER:PTHR12815
PANTHER:PTHR12815:SF32	PFAM:PF01103	PFscan:PS51779	ProteinID:CDX92515	ProteinID:CDX92515.1	SEG:seg
UniParc:UPI0004EF24D8	MapMan:35.1	:	:	:	:

Description

BnaA10g15540D

Coordinates

chrLK031872:-:1025195..1028091

Molecular Weight (calculated)

52701.9 Da

IEP (calculated)

8.025

GRAVY (calculated)

-0.351

Length

478 amino acids

Sequence
(BLAST)

001: MHGHDEDVHL SSSSIRINPS PHDNSLLSNL QSCSKTLSSH LSNTRLSLTR MLDSLKNRHA SPRLTQTRPV RRHNSPTQML NSVTQLMIGS KSPLLSLSLI
101: QSTQSIWSDP GAERLSSPLL CCASLSLNRP SESTQTVEGK DVIQQQQQVQ KGHSSASRNA EERVLISEVL VRTKDGEELE RKDLEVEALA ALKACRANSA
201: LTVREVQEDV HRIIESGYFC SCTPVAVDTR DGIRLMFQVE PNQEFRGLVC ENANVLPSKF IQEAFQDGFG KVINIKRLEE AITSINGWYM ERGLFGIVSD
301: VDTLSGGIVR LQVAEAEVNN ISIRFLDRKT GEPTKGKTRV ETILRQLTTK KGQVYSMLQG KRDVDTVLAM GIMEDVSIIP QPAGDSGKVD LIMNCVERPS
401: GGFSAGGGIS SGITSGPLSG LIGSFAYSHR NIFGRNQKLN VSLERGQIDS IFRINYTDPW IEGDDKRTSR SIMVQVRP

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.