Factsheet for PGSC0003DMT400021030

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079290.1.1	Tomato	plastid	93.57	93.3
CDX92514	Canola	cytosol	43.57	78.41
VIT_06s0004g01880.t01	Wine grape	plastid	64.86	67.46
HORVU6Hr1G033430.4	Barley	cytosol	53.14	67.15
KRH10192	Soybean	plastid	64.0	66.17
GSMUA_Achr9P19020_001	Banana	plastid	62.43	65.62
KRH23145	Soybean	cytosol, nucleus, plastid	64.14	65.55
Os02t0196300-01	Rice	mitochondrion, plasma membrane, plastid	58.86	65.5
TraesCS6A01G158800.1	Wheat	plastid	59.86	63.77
EES06452	Sorghum	mitochondrion	60.0	63.73
TraesCS6D01G153700.1	Wheat	golgi	59.86	63.58
TraesCS6B01G192500.1	Wheat	mitochondrion	59.71	63.43
Zm00001d053664_P001	Maize	plastid	59.43	63.32
CDY58968	Canola	nucleus, plastid	65.86	63.06
Bra002250.1-P	Field mustard	cytosol, plastid	65.86	62.72
Zm00001d015837_P001	Maize	plastid	58.57	62.03
AT5G19620.1	Thale cress	plastid	64.86	62.02
CDX92515	Canola	nucleus, plastid	37.29	54.6
PGSC0003DMT400007724	Potato	cytosol	19.14	37.22
PGSC0003DMT400078190	Potato	plastid	18.86	15.75

Protein Annotations

Gene3D:2.40.160.50	Gene3D:3.10.20.310	MapMan:35.1	InterPro:Bac_surfAg_D15	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536
GO:GO:0009658	GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0019867
InterPro:IPR034746	UniProt:M1AEH2	PFAM:PF01103	EnsemblPlantsGene:PGSC0003DMG400008142	PGSC:PGSC0003DMG400008142	EnsemblPlants:PGSC0003DMT400021030
InterPro:POTRA	PFscan:PS51779	PANTHER:PTHR12815	PANTHER:PTHR12815:SF32	UniParc:UPI000295A8C0	SEG:seg

Description

Sorting and assembly machinery (Sam50) protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008142]

Coordinates

chr10:+:58485695..58492327

Molecular Weight (calculated)

76259.2 Da

IEP (calculated)

7.606

GRAVY (calculated)

-0.180

Length

700 amino acids

Sequence
(BLAST)

001: MLQNEDVRFT SSSIKLPLFS LPHLHLRTPN PFIANLHLVV QNFPKFPHPF RQNLNPTAAF LRTLSKFQHP FHQKFNPQNA ILQFLRKPII PFSWNLSNTS
101: PLLCCASIAL SQSNLDDSAP SLGTKTGSGN EERVLISEVL VRSKDGEELE RKDLESEVLN ALKACRPNSA LTVQEVQEDV HRIIASGYFC SCMPVAVDTR
201: DGIRLVFQVE PNQEFHGLVC EGANVLPARF IEDSFRDGYG TPSLYSLYTS IVISFHMQEL LLLFQVSSVE ILSGGMIRLE ISEAEVNNIA IRFLDKTGEP
301: TVGKTRPETI LRQLTTKKGQ VYSMLQGKRD VDTVLAMGIM EDVSIIPQPA GDTGKVDLVM NVVERKSGGG ISAGGGISSG ITSGPLTGLI GSCAIYHKNL
401: FGRNQKLNLS LERGQVDSVF RINYTDPWIE GDDKRTSRSI MIQNSRTPGT LVHNQPDGSL TIGRVTAGIE YSRPFRPKWN GTAGIIFQRA GARDDKGSPI
501: IRDYYSSPLT ASGNTHDDML LAKLETVYTG SGDPGSSVFV FNMDQGLPVW SDWLVFNRVN ARARKGLALG PMHLLLSFSG GHVVGNFPPH EAFAIGGTNS
601: VRGYEEGAVG SSRSYVVGCG EISFPLMGPV EGAVFADYGS DLGSGPSVPG DPAGPRRKPG SGYGCGVGIR VDSPLGPLRL EYAFNDQRTG RFHFGVGLRN

Best Arabidopsis Sequence Match ( AT5G19620.1 )
(BLAST)

001: MHCHNDDVRF SSSSIRIHSP SPKEQHSLLT NLQSCSKTFV SHLSNTRNSL NQMLQSLKNR HTPPPRSVRR PNLPTQMLNS VTQLMIGKSS PISLSLIQST
101: QFNWSESRDE NVETIRGLSS PLLCCASLSL TRPNESTQSV EGKDTVQQQK GHSVSRNAEE RVLISEVLVR TKDGEELERK DLEMEALAAL KACRANSALT
201: IREVQEDVHR IIESGYFCSC TPVAVDTRDG IRLMFQVEPN QEFRGLVCEN ANVLPSKFIH EAFRDGFGKV INIKRLEEAI TSINGWYMER GLFGIVSDID
301: TLSGGIVRLQ VAEAEVNNIS IRFLDRKTGE PTKGKTSPET ILRQLTTKKG QVYSMLQGKR DVDTVLAMGI MEDVSIIPQP AGDSGKVDLI MNCVERPSGG
401: FSAGGGISSG ITSGPLSGLI GSFAYSHRNL FGRNQKLNVS LERGQIDSIF RINYTDPWIE GDDKRTSRSI MVQNSRTPGN LVHGNQPDNS SLTIGRVTAG
501: VEYSRPFRPK WNGTAGLIFQ HAGARDEQGN PIIKDFYSSP LTASGKPHDE TMLAKLESIY TGSGDQGSTM FAFNMEQGLP VLPEWLCFNR VTGRARKGIH
601: IGPARFLFSL SGGHVVGKFS PHEAFVIGGT NSVRGYEEGA VGSGRSYVVG SGELSFPVRG PVEGVIFTDY GTDMGSGSTV PGDPAGARLK PGSGYGYGLG
701: VRVDSPLGPL RLEYAFNDQH AGRFHFGVGL RN

Arabidopsis Description

OEP80Outer envelope protein 80, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C5J8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.