Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- peroxisome 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os07t0647800-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G46740.1 | Os07t0647800-01 | AT1G63900.1 | 23118188 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P03830_001 | Banana | cytosol | 24.69 | 42.55 |
| Os11t0116500-01 | Rice | cytosol | 83.95 | 30.91 |
| GSMUA_Achr6P15190_001 | Banana | mitochondrion | 40.74 | 13.58 |
| Os03t0271200-01 | Rice | plastid | 45.27 | 13.46 |
| VIT_06s0004g05150.t01 | Wine grape | plastid | 40.74 | 12.25 |
| AT3G46740.1 | Thale cress | plastid | 41.15 | 12.22 |
| KRH10219 | Soybean | plastid | 39.92 | 12.22 |
| Bra006282.1-P | Field mustard | plasma membrane | 11.52 | 12.12 |
| GSMUA_Achr10P... | Banana | cytosol | 27.57 | 12.12 |
| CDX78609 | Canola | extracellular | 7.41 | 12.0 |
| Solyc06g076360.2.1 | Tomato | plastid | 39.92 | 11.95 |
| KRH23106 | Soybean | endoplasmic reticulum | 39.09 | 11.88 |
| PGSC0003DMT400078190 | Potato | plastid | 39.51 | 11.46 |
| AT1G35860.1 | Thale cress | nucleus | 11.52 | 7.02 |
| Os02t0196300-01 | Rice | mitochondrion, plasma membrane, plastid | 11.93 | 4.61 |
| Os03t0271300-01 | Rice | mitochondrion | 7.0 | 3.62 |
| Os05t0510200-01 | Rice | cytosol, nucleus, plasma membrane | 2.88 | 1.94 |
| AT4G09080.2 | Thale cress | golgi | 2.88 | 1.72 |
| GSMUA_Achr9P03840_001 | Banana | cytosol | 1.65 | 1.28 |
| CDX70592 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os12t0115950-00 | EnsemblPlantsGene:Os12g0115950 | Gene3D:3.10.20.310 | PANTHER:PTHR12815 | PANTHER:PTHR12815:SF14 | ProteinID:BAT15603.1 |
| UniParc:UPI000393986D | UniProt:A0A0P0Y654 | MapMan:35.1 | : | : | : |
Description
Conserved hypothetical protein. (Os12t0115950-00)
Coordinates
chr12:-:780039..783466
Molecular Weight (calculated)
26140.0 Da
IEP (calculated)
6.763
GRAVY (calculated)
-0.206
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSCFTLDSA SDDGRSTAQG QGWCAGVGGF LSSFFSAGAA RADGGKPSPD WDAHGLAASA LPVPLSRLDG KKRYKVSELT FLDRRTRAAA EDPLFDALRP
101: GGVYTRAQLR DELDALAASG MFDHVTFQTK PCVLPEKLQR ELQGMVKKQR KVSSGLLKRM AGRIERWYHD EGFQCAQVVG YNGNLDAGEV VCEVVEGDIT
201: KVEYQFVEAM SSTATPASLS LIGSFLNSFV LGISTTMGQG SRL
101: GGVYTRAQLR DELDALAASG MFDHVTFQTK PCVLPEKLQR ELQGMVKKQR KVSSGLLKRM AGRIERWYHD EGFQCAQVVG YNGNLDAGEV VCEVVEGDIT
201: KVEYQFVEAM SSTATPASLS LIGSFLNSFV LGISTTMGQG SRL
001: MAAFSVNGQL IPTATSSTAS TSLSSRRKFL SPSSSRLPRI STQSPRVPSI KCSKSLPNRD TETSSKDSLL KNLAKPLAVA SVSSAASFFL FRISNLPSVL
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
101: TGGGGGGDGN FGGFGGGGGG GDGNDGGFWG KLFSPSPAVA DEEQSPDWDS HGLPANIVVQ LNKLSGFKKY KVSDIMFFDR RRQTTIGTED SFFEMVSIRP
201: GGVYTKAQLQ KELETLATCG MFEKVDLEGK TKPDGTLGVT ISFAESTWQS ADRFRCINVG LMVQSKPIEM DSDMTDKEKL EYYRSLEKDY KRRIDRARPC
301: LLPAPVYGEV MQMLRDQGKV SARLLQRIRD RVQKWYHDEG YACAQVVNFG NLNTKEVVCE VVEGDITQLV IQFQDKLGNV VEGNTQVPVV RRELPKQLRQ
401: GYVFNIEAGK KALSNINSLG LFSNIEVNPR PDEKNEGGII VEIKLKELEQ KSAEVSTEWS IVPGRGGAPT LASFQPGGSV TFEHRNLQGL NRSLMGSVTT
501: SNFLNPQDDL SFKLEYVHPY LDGVYNPRNR TFKTSCFNSR KLSPVFTGGP GVEEVPPIWV DRAGVKANIT ENFTRQSKFT YGLVMEEITT RDESSHIAAN
601: GQRLLPSGGI SADGPPTTLS GTGVDRMAFL QANITRDNTK FVNGAVVGQR TVFQVDQGLG IGSKFPFFNR HQLTMTKFIQ LREVEQGAGK SPPPVLVLHG
701: HYGGCVGDLP SYDAFVLGGP YSVRGYNMGE LGAARNIAEV GAEIRIPVKN THVYAFVEHG NDLGSSKDVK GNPTAVYRRT GQGSSYGAGV KLGLVRAEYA
801: VDHNNGTGAL FFRFGERY
Arabidopsis Description
TOC75-3Protein TOC75-3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STE8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.