Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06650 | Canola | cytosol | 43.59 | 43.97 |
| CDY10208 | Canola | cytosol | 43.59 | 43.59 |
| AT2G30930.1 | Thale cress | plastid | 51.28 | 36.59 |
| CDX97785 | Canola | cytosol, nucleus, plastid | 52.14 | 35.26 |
| CDY29631 | Canola | cytosol, nucleus, plastid | 51.28 | 34.68 |
| CDY10760 | Canola | cytosol, nucleus, plastid | 46.15 | 31.21 |
| CDY71789 | Canola | cytosol, nucleus, plastid | 47.01 | 28.8 |
Protein Annotations
| EnsemblPlants:CDY29630 | EnsemblPlantsGene:GSBRNA2T00043382001 | ProteinID:CDY29630 | ProteinID:CDY29630.1 | SEG:seg | UniParc:UPI0004EE2626 |
| UniProt:A0A078GT44 | MapMan:35.2 | : | : | : | : |
Description
BnaA04g17970DBnaA04g17970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GT44]
Coordinates
chrLK032241:-:3734..4234
Molecular Weight (calculated)
12445.6 Da
IEP (calculated)
7.793
GRAVY (calculated)
-0.326
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLFLSDKYS KLVSFLEKAT SALNEAKESP PPKRLRLATI PEIVFDGSTQ ARNAVENAPS RGIEGAKSLL HVFEEKRTEV SSKHVGAVTN ASDGASSSST
101: VASRDLLVST DQSGHSI
101: VASRDLLVST DQSGHSI
001: MAQFLEKATS ALSEAKESVT STAESVTASL TDAEKTVNQT ARSTLTDAET TVAASVETVK TEAAAAPDKA SGVSTQAKDA VDKAFSRGIE GAKSLLQTFE
101: AKSSDISSKL VGGVTNLVSG ASSSTVANRD LPVSTDNQPL LASGEKTPWW KNCCGVLDLF KKDT
101: AKSSDISSKL VGGVTNLVSG ASSSTVANRD LPVSTDNQPL LASGEKTPWW KNCCGVLDLF KKDT
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80858]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.