Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021678.1-P | Field mustard | cytosol, nucleus, plastid | 99.42 | 99.42 |
| CDX97785 | Canola | cytosol, nucleus, plastid | 98.84 | 98.84 |
| CDY71789 | Canola | cytosol, nucleus, plastid | 76.88 | 69.63 |
| AT2G30930.1 | Thale cress | plastid | 62.43 | 65.85 |
| CDY10760 | Canola | cytosol, nucleus, plastid | 62.43 | 62.43 |
| CDY06650 | Canola | cytosol | 36.99 | 55.17 |
| CDY10208 | Canola | cytosol | 36.42 | 53.85 |
| CDY29630 | Canola | nucleus | 34.68 | 51.28 |
Protein Annotations
| EnsemblPlants:CDY29631 | EnsemblPlantsGene:GSBRNA2T00043383001 | ProteinID:CDY29631 | ProteinID:CDY29631.1 | SEG:seg | UniParc:UPI0004EDEB24 |
| UniProt:A0A078GVU9 | MapMan:35.2 | : | : | : | : |
Description
BnaA04g17960DBnaA04g17960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVU9]
Coordinates
chrLK032241:-:5528..6666
Molecular Weight (calculated)
17870.7 Da
IEP (calculated)
4.687
GRAVY (calculated)
-0.275
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFLDKAAS TLNEAKESVT ATVESVGASL TDAQKNVAAS TETARTSLAD AQETVAATTE TVKSEAEAAP GKASDVSTQA RDVLGNYMSR GIEGAKTLIH
101: GLEEKKTEVS TKLVGAFTNA VGGASSSTTV ASRDLPISTD NQPLLTGERG VDTTPWWKNC CGVLDLLKTS TTK
101: GLEEKKTEVS TKLVGAFTNA VGGASSSTTV ASRDLPISTD NQPLLTGERG VDTTPWWKNC CGVLDLLKTS TTK
001: MAQFLEKATS ALSEAKESVT STAESVTASL TDAEKTVNQT ARSTLTDAET TVAASVETVK TEAAAAPDKA SGVSTQAKDA VDKAFSRGIE GAKSLLQTFE
101: AKSSDISSKL VGGVTNLVSG ASSSTVANRD LPVSTDNQPL LASGEKTPWW KNCCGVLDLF KKDT
101: AKSSDISSKL VGGVTNLVSG ASSSTVANRD LPVSTDNQPL LASGEKTPWW KNCCGVLDLF KKDT
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80858]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.