Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06650 | Canola | cytosol | 94.87 | 95.69 |
| AT1G06540.1 | Thale cress | cytosol | 72.65 | 68.0 |
| CDY29630 | Canola | nucleus | 43.59 | 43.59 |
| CDX97785 | Canola | cytosol, nucleus, plastid | 53.85 | 36.42 |
| CDY29631 | Canola | cytosol, nucleus, plastid | 53.85 | 36.42 |
| CDY71789 | Canola | cytosol, nucleus, plastid | 49.57 | 30.37 |
| CDY10760 | Canola | cytosol, nucleus, plastid | 36.75 | 24.86 |
Protein Annotations
| EnsemblPlants:CDY10208 | EnsemblPlantsGene:GSBRNA2T00032030001 | ProteinID:CDY10208 | ProteinID:CDY10208.1 | SEG:seg | UniParc:UPI0004EEADE9 |
| UniProt:A0A078FDQ2 | MapMan:35.2 | : | : | : | : |
Description
BnaC05g04510DBnaC05g04510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDQ2]
Coordinates
chrLK032001:-:579111..579755
Molecular Weight (calculated)
12205.1 Da
IEP (calculated)
4.526
GRAVY (calculated)
-0.309
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDSILEKAT SALSEAAKTD VFKDAVDNVV SRGIEGGKSL LHNLEEKKGE VSSKIVGAVS QFTGGGADSS ATTADRDLPV STDNQPLLAS RETATPWWKS
101: CCEILDLLKA SSSSSSN
101: CCEILDLLKA SSSSSSN
001: MADSLLQKAT SALGEAKQTV MASAETAKTN VVKDAVDNVV SRGIDGAKTL LHGLEEKKDE VSSKIMGAVT HFTGSADSAA TTANRDLPVS TDNQPLLAAG
101: REVETPWWKN CCGILDLLKA SSSAT
101: REVETPWWKN CCGILDLLKA SSSAT
Arabidopsis Description
F12K11.13 [Source:UniProtKB/TrEMBL;Acc:Q9SHJ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.