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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX89402
CDX89404
CDX90175 peroxisome
CDX92368
CDX94426
CDX94429
CDX99799 peroxisome
CDY05274
CDY09128
CDY24684
CDY34947
CDY35676
CDY37482
CDY43325 peroxisome
CDY49480
CDY50786 peroxisome
CDY51733
CDY51734
CDY55133
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G46060.1 CDX90175 AT1G29260.1 23297417
AT3G46060.1 CDX99799 AT1G29260.1 23297417
AT3G46060.1 CDY43325 AT1G29260.1 23297417
AT3G46060.1 CDY50786 AT1G29260.1 23297417
AT3G46060.1 CDY05274 AT3G06540.1 21798944
AT3G46060.1 CDY24684 AT3G06540.1 21798944
AT3G46060.1 CDY34947 AT3G06540.1 21798944
AT3G46060.1 CDY37482 AT3G13720.1 21798944
AT3G46060.1 CDY51733 AT3G13720.1 21798944
AT3G46060.1 CDY51734 AT3G13720.1 21798944
AT3G46060.1 CDY55133 AT3G13720.1 21798944
AT3G46060.1 CDX89402 AT4G25660.1 21798944
AT3G46060.1 CDX89404 AT4G25660.1 21798944
AT3G46060.1 CDX94426 AT4G25660.1 21798944
AT3G46060.1 CDX94429 AT4G25660.1 21798944
AT3G46060.1 CDY49480 AT4G25660.1 21798944
AT3G46060.1 CDY66007 AT4G25660.1 21798944
AT3G46060.1 CDX70995 AT5G22290.1 21798944
AT3G46060.1 CDX88803 AT5G22290.1 21798944
AT3G46060.1 CDX92368 AT5G22290.1 21798944
AT3G46060.1 CDY09128 AT5G22290.1 21798944
AT3G46060.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX86045 Canola cytosol 69.81 99.54
CDY30926 Canola cytosol 69.48 99.07
AT3G46060.1 Thale cress cytosol 68.83 98.15
CDX68365 Canola cytosol 68.51 97.69
CDY71506 Canola cytosol 68.51 97.69
CDX77855 Canola cytosol 68.51 97.69
CDY72056 Canola cytosol 39.29 96.8
CDX88726 Canola cytosol 66.88 95.37
CDX88725 Canola cytosol 66.88 95.37
CDY31592 Canola cytosol 66.88 95.37
Solyc06g005350.2.1 Tomato cytosol 44.48 95.14
KRH29838 Soybean endoplasmic reticulum 65.91 94.86
KRH24835 Soybean cytosol 65.58 94.39
VIT_06s0004g04200.t01 Wine grape cytosol 65.91 93.98
PGSC0003DMT400040138 Potato cytosol 65.58 93.52
CDX80224 Canola cytosol 64.61 93.43
Solyc11g073050.1.1 Tomato endoplasmic reticulum 65.26 93.06
KRH10292 Soybean cytosol 64.61 92.56
KRH23030 Soybean endoplasmic reticulum 64.29 92.09
Os03t0819900-01 Rice plasma membrane 63.96 92.06
PGSC0003DMT400008917 Potato cytosol 64.29 91.67
Os05t0461300-01 Rice plastid 64.29 91.67
EES19652 Sorghum cytosol 63.96 91.63
Zm00001d010538_P005 Maize cytosol 63.96 91.63
Zm00001d034638_P001 Maize cytosol 63.96 91.63
Zm00001d038380_P001 Maize extracellular, plasma membrane 63.96 91.63
EER93195 Sorghum cytosol 63.64 91.59
GSMUA_Achr10P... Banana cytosol 63.96 91.2
GSMUA_Achr11P... Banana cytosol 63.96 91.2
GSMUA_Achr6P34270_001 Banana cytosol 63.96 91.2
GSMUA_Achr9P03220_001 Banana cytosol 63.96 91.2
Os07t0239400-01 Rice plasma membrane 63.64 91.16
CDY09249 Canola cytosol 63.64 90.74
TraesCS1A01G286200.1 Wheat cytosol 62.66 90.19
TraesCS1B01G295600.1 Wheat cytosol 62.66 90.19
TraesCS1D01G285200.1 Wheat cytosol 62.66 90.19
GSMUA_AchrUn_... Banana cytosol 62.66 89.35
TraesCS3B01G388900.1 Wheat cytosol 62.66 89.35
TraesCS3A01G356000.3 Wheat plastid 62.66 89.35
TraesCS5B01G489300.1 Wheat golgi 62.01 89.25
TraesCS5A01G476400.1 Wheat cytosol 61.69 88.78
GSMUA_Achr8P02620_001 Banana cytosol 62.01 88.43
TraesCS5D01G489700.1 Wheat cytosol 61.36 88.32
GSMUA_Achr10P... Banana cytosol 61.69 87.96
OQU88745 Sorghum cytosol 62.99 85.84
CDY11256 Canola cytosol 59.42 84.33
HORVU1Hr1G072070.1 Barley cytosol 60.39 82.67
CDY54609 Canola cytosol 58.12 82.11
CDY41572 Canola cytosol 58.12 82.11
CDX80871 Canola cytosol 59.42 82.06
TraesCS3D01G350000.3 Wheat cytosol 62.66 81.09
CDY07577 Canola cytosol 68.51 79.03
CDY34032 Canola cytosol 37.66 78.91
CDY52746 Canola cytosol 68.18 78.07
CDY70243 Canola cytosol 37.34 75.66
CDX94925 Canola cytosol 37.99 71.34
Bra038265.1-P Field mustard cytosol 85.06 69.68
HORVU5Hr1G112790.2 Barley cytosol, extracellular 58.12 69.11
HORVU3Hr1G086830.7 Barley cytosol 54.22 63.02
CDY65880 Canola cytosol 40.58 61.88
CDX76566 Canola cytosol 40.58 61.88
CDX77748 Canola cytosol 40.26 61.39
CDY33521 Canola cytosol 40.26 61.39
CDX90468 Canola cytosol 40.26 61.39
CDY43436 Canola cytosol 39.94 60.89
CDY40564 Canola cytosol 39.94 60.89
CDY28967 Canola cytosol 39.94 60.89
CDY67887 Canola cytosol 39.94 60.59
CDY47919 Canola vacuole 38.64 57.77
CDY56593 Canola cytosol 38.31 57.28
CDX73855 Canola cytosol 38.31 57.28
CDY52557 Canola cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 39.61 57.28
CDY38404 Canola endoplasmic reticulum 39.94 56.16
CDX85225 Canola cytosol 27.27 53.16
CDY38055 Canola cytosol 40.26 52.32
CDY09621 Canola cytosol 39.29 49.79
CDX75535 Canola cytosol 28.9 42.18
CDX69177 Canola cytosol 28.9 42.18
CDY50126 Canola cytosol 28.57 41.9
CDY58166 Canola cytosol 28.57 41.9
CDY09641 Canola cytosol 28.57 41.71
CDY35596 Canola cytosol 28.57 41.71
CDY42961 Canola cytosol 28.57 41.71
CDY47039 Canola plasma membrane 28.57 41.71
CDX72559 Canola cytosol 28.57 41.71
Protein Annotations
MapMan:22.8.1.5Gene3D:3.40.50.300GO:A0A078EDA8EnsemblPlants:CDX99131ProteinID:CDX99131ProteinID:CDX99131.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00107288001InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419
PANTHER:PTHR24073PANTHER:PTHR24073:SF829SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176
SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI0004EDC87D
SEG:seg:::::
Description
BnaA06g18220D
Coordinates
chrLK031908:-:591876..595673
Molecular Weight (calculated)
34122.7 Da
IEP (calculated)
8.682
GRAVY (calculated)
-0.283
Length
308 amino acids
Sequence
(BLAST)
001: MNPNKKQIRI NLIEVPHNHK AQKLKLKSDQ LAHKASWPSS FLLTCAWYPI VHSEEAGGKE ESKSGVGRIL AVLQILCSDY IGFFSVSFDP NPMAAPPARA
101: RADYDYLIKL LLIGDSGVGK SCLLLRFSDG SFTTSFITTI GIDFKIRTIE LDGKRIKLQI WDTAGQERFR TITTAYYRGA MGILLVYDVT DESSFNNIRN
201: WIRNIEQHAS DNVNKILVGN KADMDESKRA VPTAKGQALA DEYGIKFFET SAKTNLNVEE VFFSIGRDIK QRLSDTDSKA EPATIRISQT DQAAGAAQAT
301: QKSACCGS
Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
Arabidopsis Description
RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.