Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65880 | Canola | cytosol | 89.95 | 97.52 |
| CDX76566 | Canola | cytosol | 89.95 | 97.52 |
| AT4G17530.1 | Thale cress | cytosol | 89.04 | 96.53 |
| CDX90468 | Canola | cytosol | 88.13 | 95.54 |
| CDY43436 | Canola | cytosol | 87.67 | 95.05 |
| CDY40564 | Canola | cytosol | 87.67 | 95.05 |
| CDX77748 | Canola | cytosol | 87.67 | 95.05 |
| CDY33521 | Canola | cytosol | 87.67 | 95.05 |
| CDY28967 | Canola | cytosol | 87.67 | 95.05 |
| CDY67887 | Canola | cytosol | 87.67 | 94.58 |
| CDY52557 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 90.87 | 93.43 |
| CDX85225 | Canola | cytosol | 65.3 | 90.51 |
| CDY09621 | Canola | cytosol | 88.58 | 79.84 |
| Bra040162.1-P | Field mustard | cytosol | 93.15 | 74.45 |
| CDY47919 | Canola | vacuole | 68.49 | 72.82 |
| CDY56593 | Canola | cytosol | 68.04 | 72.33 |
| CDX73855 | Canola | cytosol | 68.04 | 72.33 |
| CDY38055 | Canola | cytosol | 75.8 | 70.04 |
| CDY72056 | Canola | cytosol | 36.99 | 64.8 |
| CDY71506 | Canola | cytosol | 56.62 | 57.41 |
| CDX68365 | Canola | cytosol | 56.62 | 57.41 |
| CDY30926 | Canola | cytosol | 56.62 | 57.41 |
| CDX86045 | Canola | cytosol | 56.16 | 56.94 |
| CDX77855 | Canola | cytosol | 56.16 | 56.94 |
| CDY31592 | Canola | cytosol | 56.16 | 56.94 |
| CDX88726 | Canola | cytosol | 54.79 | 55.56 |
| CDX88725 | Canola | cytosol | 54.79 | 55.56 |
| CDX80224 | Canola | cytosol | 53.42 | 54.93 |
| CDY11256 | Canola | cytosol | 54.34 | 54.84 |
| CDY41572 | Canola | cytosol | 53.42 | 53.67 |
| CDY54609 | Canola | cytosol | 53.42 | 53.67 |
| CDX80871 | Canola | cytosol | 54.34 | 53.36 |
| CDY09249 | Canola | cytosol | 52.51 | 53.24 |
| CDY34032 | Canola | cytosol | 32.42 | 48.3 |
| CDY70243 | Canola | cytosol | 32.42 | 46.71 |
| CDY07577 | Canola | cytosol | 55.25 | 45.32 |
| CDX72559 | Canola | cytosol | 43.38 | 45.02 |
| CDY52746 | Canola | cytosol | 55.25 | 44.98 |
| CDX69177 | Canola | cytosol | 42.92 | 44.55 |
| CDX75535 | Canola | cytosol | 42.92 | 44.55 |
| CDX94925 | Canola | cytosol | 33.33 | 44.51 |
| CDY47039 | Canola | plasma membrane | 42.47 | 44.08 |
| CDY50126 | Canola | cytosol | 42.01 | 43.81 |
| CDY58166 | Canola | cytosol | 42.01 | 43.81 |
| CDY35596 | Canola | cytosol | 41.55 | 43.13 |
| CDY42961 | Canola | cytosol | 41.55 | 43.13 |
| CDY09641 | Canola | cytosol | 41.55 | 43.13 |
| CDX99131 | Canola | cytosol | 56.16 | 39.94 |
Protein Annotations
| MapMan:22.8.1.4 | Gene3D:3.40.50.300 | GO:A0A078HM09 | UniProt:A0A078HM09 | EnsemblPlants:CDY38404 | ProteinID:CDY38404 |
| ProteinID:CDY38404.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00065832001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF666 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | SignalP:SignalP-noTM | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
| TIGRFAMs:TIGR00231 | UniParc:UPI0004EE976E | SEG:seg | : | : | : |
Description
BnaC01g10130DBnaC01g10130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM09]
Coordinates
chrLK032423:-:191990..193575
Molecular Weight (calculated)
24316.0 Da
IEP (calculated)
5.347
GRAVY (calculated)
-0.093
Length
219 amino acids
Sequence
(BLAST)
(BLAST)
001: MKALLFCLID FSISWIVFRL DLDYLFKLLL IGDSGVGKSC LLLRFADDSY LDSYISTIGV DFKIRTVEQD GKTIKLQIWD TAGQERFRTI TSSYYRGAHG
101: IIVTYDVTDQ ESFNNVKQWL NEIDRYASEN VNKLLVGNKC DLTSQKVVST ETAKAFADEL GIPFLETSAK NATNVEEAFM AMTAAIKTRM ASQPAGGSKP
201: STVQIRGQPV NQQSGCCSS
101: IIVTYDVTDQ ESFNNVKQWL NEIDRYASEN VNKLLVGNKC DLTSQKVVST ETAKAFADEL GIPFLETSAK NATNVEEAFM AMTAAIKTRM ASQPAGGSKP
201: STVQIRGQPV NQQSGCCSS
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST
Arabidopsis Description
RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.