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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76566 Canola cytosol 100.0 100.0
AT4G17530.1 Thale cress cytosol 99.01 99.01
CDX90468 Canola cytosol 98.02 98.02
CDY43436 Canola cytosol 97.52 97.52
CDY28967 Canola cytosol 97.52 97.52
CDY33521 Canola cytosol 97.52 97.52
CDY40564 Canola cytosol 97.52 97.52
CDX77748 Canola cytosol 97.52 97.52
CDY67887 Canola cytosol 97.52 97.04
CDY52557 Canola cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 97.52 92.49
CDX85225 Canola cytosol 70.79 90.51
CDY38404 Canola endoplasmic reticulum 97.52 89.95
CDY09621 Canola cytosol 95.05 79.01
CDY47919 Canola vacuole 75.74 74.27
CDX73855 Canola cytosol 75.25 73.79
CDY56593 Canola cytosol 75.25 73.79
CDY38055 Canola cytosol 84.16 71.73
CDY72056 Canola cytosol 41.09 66.4
CDX68365 Canola cytosol 62.38 58.33
CDY71506 Canola cytosol 62.38 58.33
CDY30926 Canola cytosol 62.38 58.33
CDX77855 Canola cytosol 61.88 57.87
CDY31592 Canola cytosol 61.88 57.87
CDX86045 Canola cytosol 61.88 57.87
CDX88726 Canola cytosol 60.4 56.48
CDX88725 Canola cytosol 60.4 56.48
CDX80224 Canola cytosol 58.91 55.87
CDY11256 Canola cytosol 59.9 55.76
CDY41572 Canola cytosol 58.91 54.59
CDY54609 Canola cytosol 58.91 54.59
CDX80871 Canola cytosol 59.9 54.26
CDY09249 Canola cytosol 57.92 54.17
CDY34032 Canola cytosol 35.64 48.98
CDY70243 Canola cytosol 35.64 47.37
CDY07577 Canola cytosol 60.89 46.07
CDX72559 Canola cytosol 48.02 45.97
CDY52746 Canola cytosol 60.89 45.72
CDX75535 Canola cytosol 47.52 45.5
CDX69177 Canola cytosol 47.52 45.5
CDX94925 Canola cytosol 36.63 45.12
CDY47039 Canola plasma membrane 47.03 45.02
CDY50126 Canola cytosol 46.53 44.76
CDY58166 Canola cytosol 46.53 44.76
CDY42961 Canola cytosol 46.04 44.08
CDY09641 Canola cytosol 46.04 44.08
CDY35596 Canola cytosol 46.04 44.08
CDX99131 Canola cytosol 61.88 40.58
Protein Annotations
MapMan:22.8.1.4Gene3D:3.40.50.300GO:A0A078JHB1UniProt:A0A078JHB1EnsemblPlants:CDY65880ProteinID:CDY65880
ProteinID:CDY65880.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00050939001InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449
PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF666SMART:SM00173SMART:SM00174SMART:SM00175
SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00006C6081
Description
BnaAnng21250DBnaA08g08340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHB1]
Coordinates
chrLK034987:+:13213..15014
Molecular Weight (calculated)
22324.4 Da
IEP (calculated)
5.042
GRAVY (calculated)
-0.305
Length
202 amino acids
Sequence
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPSTVQIRG QPVNQQSGCC
201: SS
Best Arabidopsis Sequence Match ( AT4G17530.1 )
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPPTVQIRG QPVNQQSGCC
201: SS
Arabidopsis Description
RABD2CRAB1C [Source:UniProtKB/TrEMBL;Acc:A0A178USY3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.