Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
- endoplasmic reticulum 3
- golgi 3
- extracellular 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017497.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY40564 | Canola | cytosol | 100.0 | 100.0 |
| CDY28967 | Canola | cytosol | 100.0 | 100.0 |
| CDY67887 | Canola | cytosol | 100.0 | 99.51 |
| CDY33521 | Canola | cytosol | 99.01 | 99.01 |
| CDX77748 | Canola | cytosol | 99.01 | 99.01 |
| AT5G47200.1 | Thale cress | cytosol | 98.51 | 98.51 |
| CDX90468 | Canola | cytosol | 98.02 | 98.02 |
| CDX76566 | Canola | cytosol | 97.52 | 97.52 |
| CDY65880 | Canola | cytosol | 97.52 | 97.52 |
| CDX85225 | Canola | cytosol | 73.27 | 93.67 |
| CDY52557 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 95.05 | 90.14 |
| CDY38404 | Canola | endoplasmic reticulum | 95.05 | 87.67 |
| CDY09621 | Canola | cytosol | 96.04 | 79.84 |
| CDY47919 | Canola | vacuole | 74.75 | 73.3 |
| CDY56593 | Canola | cytosol | 74.26 | 72.82 |
| CDX73855 | Canola | cytosol | 74.26 | 72.82 |
| CDY38055 | Canola | cytosol | 84.16 | 71.73 |
| CDY72056 | Canola | cytosol | 41.09 | 66.4 |
| CDY71506 | Canola | cytosol | 61.39 | 57.41 |
| CDX68365 | Canola | cytosol | 61.39 | 57.41 |
| CDY30926 | Canola | cytosol | 61.39 | 57.41 |
| CDX77855 | Canola | cytosol | 60.89 | 56.94 |
| CDX86045 | Canola | cytosol | 60.89 | 56.94 |
| CDY31592 | Canola | cytosol | 60.4 | 56.48 |
| CDX88726 | Canola | cytosol | 59.41 | 55.56 |
| CDX88725 | Canola | cytosol | 59.41 | 55.56 |
| CDY11256 | Canola | cytosol | 58.91 | 54.84 |
| CDY09249 | Canola | cytosol | 58.42 | 54.63 |
| CDY41572 | Canola | cytosol | 58.91 | 54.59 |
| CDX80224 | Canola | cytosol | 57.43 | 54.46 |
| CDY54609 | Canola | cytosol | 57.92 | 53.67 |
| CDX80871 | Canola | cytosol | 58.91 | 53.36 |
| CDY34032 | Canola | cytosol | 34.65 | 47.62 |
| CDY70243 | Canola | cytosol | 34.65 | 46.05 |
| CDX72559 | Canola | cytosol | 48.02 | 45.97 |
| CDY07577 | Canola | cytosol | 59.9 | 45.32 |
| CDX69177 | Canola | cytosol | 47.03 | 45.02 |
| CDX75535 | Canola | cytosol | 47.03 | 45.02 |
| CDY52746 | Canola | cytosol | 59.9 | 44.98 |
| CDY50126 | Canola | cytosol | 46.53 | 44.76 |
| CDY58166 | Canola | cytosol | 46.53 | 44.76 |
| CDY47039 | Canola | plasma membrane | 46.53 | 44.55 |
| CDY42961 | Canola | cytosol | 46.04 | 44.08 |
| CDY35596 | Canola | cytosol | 46.04 | 44.08 |
| CDY09641 | Canola | cytosol | 46.04 | 44.08 |
| CDX94925 | Canola | cytosol | 35.64 | 43.9 |
| CDX99131 | Canola | cytosol | 60.89 | 39.94 |
Protein Annotations
| MapMan:22.8.1.4 | Gene3D:3.40.50.300 | GO:A0A078HTE7 | UniProt:A0A078HTE7 | ProteinID:CDY28967.1 | ProteinID:CDY40564.1 |
| EnsemblPlants:CDY43436 | ProteinID:CDY43436 | ProteinID:CDY43436.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00076658001 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF666 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom |
| InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI00019AA8E0 | : | : | : |
Description
BnaAnng07080DBnaA02g25090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTE7]
Coordinates
chrLK032557:-:26476..28433
Molecular Weight (calculated)
22345.3 Da
IEP (calculated)
4.850
GRAVY (calculated)
-0.337
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAQAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPSGG AKPPTVQIRG QPVNQQSGCC
201: SS
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAQAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPSGG AKPPTVQIRG QPVNQQSGCC
201: SS
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG AKPPTVQIRG QPVNQQSGCC
201: SS
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG AKPPTVQIRG QPVNQQSGCC
201: SS
Arabidopsis Description
RABD2BRas-related protein RABD2b [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.