Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35860.1 | CDY66646 | AT2G36840.1 | 21798944 |
| AT4G35860.1 | CDY67381 | AT2G36840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011645.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX75535 | Canola | cytosol | 100.0 | 100.0 |
| CDY47039 | Canola | plasma membrane | 97.63 | 97.63 |
| CDX72559 | Canola | cytosol | 97.16 | 97.16 |
| AT4G35860.1 | Thale cress | cytosol | 96.68 | 96.68 |
| VIT_14s0066g00180.t01 | Wine grape | cytosol | 91.94 | 92.82 |
| PGSC0003DMT400032908 | Potato | cytosol | 91.47 | 91.47 |
| Solyc02g093530.2.1 | Tomato | plastid | 91.0 | 91.0 |
| KRG93957 | Soybean | endoplasmic reticulum | 91.0 | 91.0 |
| KRH58242 | Soybean | endoplasmic reticulum | 90.05 | 90.05 |
| CDY42961 | Canola | cytosol | 86.73 | 86.73 |
| CDY35596 | Canola | cytosol | 86.73 | 86.73 |
| CDY09641 | Canola | cytosol | 86.26 | 86.26 |
| CDY50126 | Canola | cytosol | 84.83 | 85.24 |
| CDY58166 | Canola | cytosol | 84.83 | 85.24 |
| CDY72056 | Canola | cytosol | 29.38 | 49.6 |
| CDX76566 | Canola | cytosol | 45.5 | 47.52 |
| CDY65880 | Canola | cytosol | 45.5 | 47.52 |
| CDY56593 | Canola | cytosol | 45.97 | 47.09 |
| CDX73855 | Canola | cytosol | 45.97 | 47.09 |
| CDY28967 | Canola | cytosol | 45.02 | 47.03 |
| CDY40564 | Canola | cytosol | 45.02 | 47.03 |
| CDY43436 | Canola | cytosol | 45.02 | 47.03 |
| CDY67887 | Canola | cytosol | 45.02 | 46.8 |
| CDY33521 | Canola | cytosol | 44.55 | 46.53 |
| CDX90468 | Canola | cytosol | 44.55 | 46.53 |
| CDX77748 | Canola | cytosol | 44.55 | 46.53 |
| CDY47919 | Canola | vacuole | 45.02 | 46.12 |
| CDY52557 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 44.55 | 44.13 |
| CDY31592 | Canola | cytosol | 44.08 | 43.06 |
| CDY38404 | Canola | endoplasmic reticulum | 44.55 | 42.92 |
| CDX80224 | Canola | cytosol | 42.65 | 42.25 |
| CDX68365 | Canola | cytosol | 43.13 | 42.13 |
| CDY71506 | Canola | cytosol | 43.13 | 42.13 |
| CDX77855 | Canola | cytosol | 43.13 | 42.13 |
| CDY09249 | Canola | cytosol | 43.13 | 42.13 |
| CDY30926 | Canola | cytosol | 43.13 | 42.13 |
| CDY11256 | Canola | cytosol | 42.65 | 41.47 |
| CDY38055 | Canola | cytosol | 46.45 | 41.35 |
| CDX88726 | Canola | cytosol | 42.18 | 41.2 |
| CDX88725 | Canola | cytosol | 42.18 | 41.2 |
| CDX86045 | Canola | cytosol | 42.18 | 41.2 |
| CDY41572 | Canola | cytosol | 42.18 | 40.83 |
| CDY54609 | Canola | cytosol | 41.71 | 40.37 |
| CDX80871 | Canola | cytosol | 42.65 | 40.36 |
| CDX85225 | Canola | cytosol | 29.38 | 39.24 |
| CDY09621 | Canola | cytosol | 43.6 | 37.86 |
| CDY34032 | Canola | cytosol | 24.17 | 34.69 |
| CDY07577 | Canola | cytosol | 42.18 | 33.33 |
| CDY52746 | Canola | cytosol | 42.18 | 33.09 |
| CDY70243 | Canola | cytosol | 23.7 | 32.89 |
| CDX94925 | Canola | cytosol | 24.17 | 31.1 |
| CDX99131 | Canola | cytosol | 42.18 | 28.9 |
Protein Annotations
| MapMan:22.8.1.2 | Gene3D:3.40.50.300 | GO:A0A078BXU4 | EnsemblPlants:CDX69177 | ProteinID:CDX69177 | ProteinID:CDX69177.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00130969001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF597 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0002546D7D | SEG:seg |
Description
BnaC01g02760D
Coordinates
chrLK031789:-:3288659..3290415
Molecular Weight (calculated)
23098.5 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.247
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGEQFAKE HGLLFLEASA RTAQNVEEAF IKTAGKILQN IQDGVFDVSN ESSGIKVGYG RPQGAAGGRD
201: GAIAQGGGCC G
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGEQFAKE HGLLFLEASA RTAQNVEEAF IKTAGKILQN IQDGVFDVSN ESSGIKVGYG RPQGAAGGRD
201: GAIAQGGGCC G
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
Arabidopsis Description
RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.