Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX70995
CDX88803
CDX89402
CDX89404
CDX90175 peroxisome
CDX92368
CDX94426
CDX94429
CDX99799 peroxisome
CDY05274
CDY09128
CDY24684
CDY34947
CDY35676
CDY37482
CDY43325 peroxisome
CDY49480
CDY50786 peroxisome
CDY51733
CDY51734
CDY55133
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G46060.1 CDX90175 AT1G29260.1 23297417
AT3G46060.1 CDX99799 AT1G29260.1 23297417
AT3G46060.1 CDY43325 AT1G29260.1 23297417
AT3G46060.1 CDY50786 AT1G29260.1 23297417
AT3G46060.1 CDY05274 AT3G06540.1 21798944
AT3G46060.1 CDY24684 AT3G06540.1 21798944
AT3G46060.1 CDY34947 AT3G06540.1 21798944
AT3G46060.1 CDY37482 AT3G13720.1 21798944
AT3G46060.1 CDY51733 AT3G13720.1 21798944
AT3G46060.1 CDY51734 AT3G13720.1 21798944
AT3G46060.1 CDY55133 AT3G13720.1 21798944
AT3G46060.1 CDX89402 AT4G25660.1 21798944
AT3G46060.1 CDX89404 AT4G25660.1 21798944
AT3G46060.1 CDX94426 AT4G25660.1 21798944
AT3G46060.1 CDX94429 AT4G25660.1 21798944
AT3G46060.1 CDY49480 AT4G25660.1 21798944
AT3G46060.1 CDY66007 AT4G25660.1 21798944
AT3G46060.1 CDX70995 AT5G22290.1 21798944
AT3G46060.1 CDX88803 AT5G22290.1 21798944
AT3G46060.1 CDX92368 AT5G22290.1 21798944
AT3G46060.1 CDY09128 AT5G22290.1 21798944
AT3G46060.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G46060.1 Thale cress cytosol 98.61 98.61
CDY30926 Canola cytosol 98.61 98.61
CDX68365 Canola cytosol 98.15 98.15
CDY71506 Canola cytosol 98.15 98.15
CDX77855 Canola cytosol 97.22 97.22
CDY72056 Canola cytosol 56.02 96.8
CDY31592 Canola cytosol 95.83 95.83
CDX88726 Canola cytosol 95.83 95.83
CDX88725 Canola cytosol 95.83 95.83
Solyc06g005350.2.1 Tomato cytosol 63.43 95.14
VIT_06s0004g04200.t01 Wine grape cytosol 94.44 94.44
KRH29838 Soybean endoplasmic reticulum 93.52 94.39
KRH24835 Soybean cytosol 93.06 93.93
CDX80224 Canola cytosol 92.59 93.9
PGSC0003DMT400040138 Potato cytosol 93.06 93.06
Solyc11g073050.1.1 Tomato endoplasmic reticulum 92.59 92.59
KRH10292 Soybean cytosol 91.67 92.09
KRH23030 Soybean endoplasmic reticulum 91.2 91.63
Os03t0819900-01 Rice plasma membrane 90.74 91.59
PGSC0003DMT400008917 Potato cytosol 91.2 91.2
Os05t0461300-01 Rice plastid 91.2 91.2
CDY09249 Canola cytosol 91.2 91.2
Zm00001d038380_P001 Maize extracellular, plasma membrane 90.74 91.16
EES19652 Sorghum cytosol 90.74 91.16
Zm00001d034638_P001 Maize cytosol 90.74 91.16
Zm00001d010538_P005 Maize cytosol 90.74 91.16
EER93195 Sorghum cytosol 90.28 91.12
GSMUA_Achr11P... Banana cytosol 90.74 90.74
GSMUA_Achr10P... Banana cytosol 90.74 90.74
GSMUA_Achr6P34270_001 Banana cytosol 90.74 90.74
GSMUA_Achr9P03220_001 Banana cytosol 90.74 90.74
Os07t0239400-01 Rice plasma membrane 90.28 90.7
TraesCS1A01G286200.1 Wheat cytosol 88.89 89.72
TraesCS1B01G295600.1 Wheat cytosol 88.89 89.72
TraesCS1D01G285200.1 Wheat cytosol 88.89 89.72
TraesCS3A01G356000.3 Wheat plastid 88.89 88.89
TraesCS3B01G388900.1 Wheat cytosol 88.89 88.89
GSMUA_AchrUn_... Banana cytosol 88.89 88.89
TraesCS5B01G489300.1 Wheat golgi 87.96 88.78
TraesCS5A01G476400.1 Wheat cytosol 87.5 88.32
GSMUA_Achr8P02620_001 Banana cytosol 87.96 87.96
TraesCS5D01G489700.1 Wheat cytosol 87.04 87.85
GSMUA_Achr10P... Banana cytosol 87.5 87.5
OQU88745 Sorghum cytosol 89.35 85.4
CDY11256 Canola cytosol 84.26 83.87
HORVU1Hr1G072070.1 Barley cytosol 85.65 82.22
CDY54609 Canola cytosol 82.41 81.65
CDY41572 Canola cytosol 82.41 81.65
CDX80871 Canola cytosol 84.26 81.61
TraesCS3D01G350000.3 Wheat cytosol 88.89 80.67
CDY34032 Canola cytosol 54.17 79.59
CDY07577 Canola cytosol 94.91 76.78
CDY70243 Canola cytosol 53.7 76.32
CDY52746 Canola cytosol 94.44 75.84
CDX94925 Canola cytosol 54.63 71.95
CDX99131 Canola cytosol 99.54 69.81
HORVU5Hr1G112790.2 Barley cytosol, extracellular 81.48 67.95
HORVU3Hr1G086830.7 Barley cytosol 76.39 62.26
CDY65880 Canola cytosol 57.87 61.88
CDX76566 Canola cytosol 57.87 61.88
CDX90468 Canola cytosol 57.41 61.39
CDX77748 Canola cytosol 57.41 61.39
CDY33521 Canola cytosol 57.41 61.39
CDY43436 Canola cytosol 56.94 60.89
CDY40564 Canola cytosol 56.94 60.89
CDY28967 Canola cytosol 56.94 60.89
CDY67887 Canola cytosol 56.94 60.59
CDY47919 Canola vacuole 55.09 57.77
Bra038265.1-P Field mustard cytosol 100.0 57.45
CDY56593 Canola cytosol 54.63 57.28
CDX73855 Canola cytosol 54.63 57.28
CDY52557 Canola cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 56.48 57.28
CDY38404 Canola endoplasmic reticulum 56.94 56.16
CDX85225 Canola cytosol 38.89 53.16
CDY38055 Canola cytosol 57.41 52.32
CDY09621 Canola cytosol 55.56 49.38
CDX75535 Canola cytosol 41.2 42.18
CDX69177 Canola cytosol 41.2 42.18
CDY58166 Canola cytosol 40.74 41.9
CDY50126 Canola cytosol 40.74 41.9
CDY47039 Canola plasma membrane 40.74 41.71
CDY42961 Canola cytosol 40.74 41.71
CDY35596 Canola cytosol 40.74 41.71
CDY09641 Canola cytosol 40.74 41.71
CDX72559 Canola cytosol 40.74 41.71
Protein Annotations
MapMan:22.8.1.5Gene3D:3.40.50.300GO:A0A078D9Z5EnsemblPlants:CDX86045ProteinID:CDX86045ProteinID:CDX86045.1
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0016787EnsemblPlantsGene:GSBRNA2T00144000001InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419
PANTHER:PTHR24073PANTHER:PTHR24073:SF829SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176
SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI0004EC6C2A
SEG:seg:::::
Description
BnaC03g55600D
Coordinates
chrLK031844:-:592382..594245
Molecular Weight (calculated)
23864.3 Da
IEP (calculated)
8.023
GRAVY (calculated)
-0.289
Length
216 amino acids
Sequence
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIRISQTDQ
201: AAGAAQATQK SACCGS
Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
Arabidopsis Description
RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.