CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31592	Canola	cytosol	97.18	95.83
AT5G59840.1	Thale cress	cytosol	95.31	93.98
CDY72056	Canola	cytosol	54.93	93.6
CDX68365	Canola	cytosol	94.84	93.52
CDY71506	Canola	cytosol	94.84	93.52
CDY30926	Canola	cytosol	94.37	93.06
CDX86045	Canola	cytosol	93.9	92.59
CDX77855	Canola	cytosol	93.43	92.13
CDX88725	Canola	cytosol	93.43	92.13
CDX88726	Canola	cytosol	93.43	92.13
KRH29838	Soybean	endoplasmic reticulum	92.02	91.59
KRH24835	Soybean	cytosol	91.55	91.12
Solyc06g005350.2.1	Tomato	cytosol	61.5	90.97
PGSC0003DMT400040138	Potato	cytosol	92.02	90.74
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	91.08	89.81
VIT_06s0004g04200.t01	Wine grape	cytosol	91.08	89.81
PGSC0003DMT400008917	Potato	cytosol	90.14	88.89
KRH10292	Soybean	cytosol	89.2	88.37
CDY09249	Canola	cytosol	89.2	87.96
KRH23030	Soybean	endoplasmic reticulum	88.73	87.91
Os03t0819900-01	Rice	plasma membrane	88.26	87.85
Zm00001d034638_P001	Maize	cytosol	88.26	87.44
EER93195	Sorghum	cytosol	87.79	87.38
Os05t0461300-01	Rice	plastid	88.26	87.04
GSMUA_Achr9P03220_001	Banana	cytosol	88.26	87.04
GSMUA_Achr6P34270_001	Banana	cytosol	88.26	87.04
GSMUA_Achr11P...	Banana	cytosol	88.26	87.04
GSMUA_Achr10P...	Banana	cytosol	88.26	87.04
Os07t0239400-01	Rice	plasma membrane	87.79	86.98
Zm00001d010538_P005	Maize	cytosol	87.32	86.51
EES19652	Sorghum	cytosol	87.32	86.51
Zm00001d038380_P001	Maize	extracellular, plasma membrane	87.32	86.51
TraesCS1D01G285200.1	Wheat	cytosol	86.39	85.98
TraesCS1A01G286200.1	Wheat	cytosol	86.39	85.98
TraesCS1B01G295600.1	Wheat	cytosol	86.39	85.98
GSMUA_AchrUn_...	Banana	cytosol	86.39	85.19
TraesCS3B01G388900.1	Wheat	cytosol	86.39	85.19
TraesCS3A01G356000.3	Wheat	plastid	86.39	85.19
GSMUA_Achr8P02620_001	Banana	cytosol	85.92	84.72
TraesCS5B01G489300.1	Wheat	golgi	84.51	84.11
GSMUA_Achr10P...	Banana	cytosol	84.98	83.8
TraesCS5A01G476400.1	Wheat	cytosol	84.04	83.64
TraesCS5D01G489700.1	Wheat	cytosol	83.57	83.18
OQU88745	Sorghum	cytosol	86.39	81.42
CDY11256	Canola	cytosol	82.63	81.11
HORVU1Hr1G072070.1	Barley	cytosol	84.98	80.44
CDX80871	Canola	cytosol	82.63	78.92
CDY41572	Canola	cytosol	80.75	78.9
CDY54609	Canola	cytosol	80.75	78.9
TraesCS3D01G350000.3	Wheat	cytosol	86.39	77.31
CDY34032	Canola	cytosol	52.11	75.51
CDY07577	Canola	cytosol	92.02	73.41
CDY52746	Canola	cytosol	91.55	72.49
CDY70243	Canola	cytosol	51.64	72.37
CDX94925	Canola	cytosol	53.05	68.9
CDX99131	Canola	cytosol	93.43	64.61
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	77.93	64.09
HORVU3Hr1G086830.7	Barley	cytosol	74.65	60.0
CDX76566	Canola	cytosol	55.87	58.91
CDY65880	Canola	cytosol	55.87	58.91
CDY33521	Canola	cytosol	54.93	57.92
CDX77748	Canola	cytosol	54.93	57.92
CDY43436	Canola	cytosol	54.46	57.43
CDX90468	Canola	cytosol	54.46	57.43
CDY28967	Canola	cytosol	54.46	57.43
CDY40564	Canola	cytosol	54.46	57.43
CDY67887	Canola	cytosol	54.46	57.14
CDX73855	Canola	cytosol	53.05	54.85
CDY56593	Canola	cytosol	53.05	54.85
CDY47919	Canola	vacuole	53.05	54.85
CDY52557	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	54.46	54.46
CDY38404	Canola	endoplasmic reticulum	54.93	53.42
CDX85225	Canola	cytosol	37.56	50.63
CDY38055	Canola	cytosol	56.34	50.63
CDY09621	Canola	cytosol	52.58	46.09
CDX69177	Canola	cytosol	42.25	42.65
CDX75535	Canola	cytosol	42.25	42.65
CDY47039	Canola	plasma membrane	41.78	42.18
CDX72559	Canola	cytosol	41.78	42.18
CDY50126	Canola	cytosol	41.31	41.9
CDY58166	Canola	cytosol	41.31	41.9
CDY42961	Canola	cytosol	41.31	41.71
CDY35596	Canola	cytosol	41.31	41.71
CDY09641	Canola	cytosol	41.31	41.71

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:A0A078CW09	EnsemblPlants:CDX80224	ProteinID:CDX80224	ProteinID:CDX80224.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00133175001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF826	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EDACB9
SEG:seg	:	:	:	:	:

Description

BnaC09g35180D

Coordinates

chrLK031820:+:619647..621544

Molecular Weight (calculated)

23584.9 Da

IEP (calculated)

8.163

GRAVY (calculated)

-0.346

Length

213 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGY IRTIELDGKR IKLQIWDTAG QERFRTITTA YYRGAMGILL VYDVTDESSF
101: NNIRNWIRNI EQHASDNVNK ILVGNKADMD ESNRAVPKAK GQALADEYGI KFFETSTKTN LNVEEVFFSI AKDIKQRLSD TDSRAEPSTI KIGQTEQAAG
201: AGQATQKSAY CGT

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.