Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17170.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT4G17170.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42961 | Canola | cytosol | 99.53 | 99.53 |
| CDY35596 | Canola | cytosol | 99.53 | 99.53 |
| AT4G17170.1 | Thale cress | cytosol | 98.58 | 98.58 |
| CDY50126 | Canola | cytosol | 98.1 | 98.57 |
| CDY58166 | Canola | cytosol | 98.1 | 98.57 |
| KRH36659 | Soybean | cytosol | 95.73 | 95.73 |
| KRH11646 | Soybean | endoplasmic reticulum | 95.73 | 95.73 |
| CDY47039 | Canola | plasma membrane | 87.2 | 87.2 |
| CDX72559 | Canola | cytosol | 86.73 | 86.73 |
| CDX75535 | Canola | cytosol | 86.26 | 86.26 |
| CDX69177 | Canola | cytosol | 86.26 | 86.26 |
| TraesCS3D01G495900.1 | Wheat | cytosol | 57.35 | 67.6 |
| TraesCS3A01G489900.1 | Wheat | cytosol | 56.87 | 67.04 |
| TraesCS3B01G547700.1 | Wheat | plastid | 52.61 | 53.37 |
| VIT_00s0455g00010.t01 | Wine grape | cytosol | 32.23 | 51.13 |
| CDY72056 | Canola | cytosol | 29.38 | 49.6 |
| CDX73855 | Canola | cytosol | 45.97 | 47.09 |
| CDY56593 | Canola | cytosol | 45.97 | 47.09 |
| CDY47919 | Canola | vacuole | 45.02 | 46.12 |
| CDY65880 | Canola | cytosol | 44.08 | 46.04 |
| CDY43436 | Canola | cytosol | 44.08 | 46.04 |
| CDY40564 | Canola | cytosol | 44.08 | 46.04 |
| CDX76566 | Canola | cytosol | 44.08 | 46.04 |
| CDY28967 | Canola | cytosol | 44.08 | 46.04 |
| CDY67887 | Canola | cytosol | 44.08 | 45.81 |
| CDY33521 | Canola | cytosol | 43.6 | 45.54 |
| CDX90468 | Canola | cytosol | 43.6 | 45.54 |
| CDX77748 | Canola | cytosol | 43.6 | 45.54 |
| CDY52557 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 43.13 | 42.72 |
| CDY31592 | Canola | cytosol | 43.13 | 42.13 |
| CDY71506 | Canola | cytosol | 42.65 | 41.67 |
| CDX68365 | Canola | cytosol | 42.65 | 41.67 |
| CDX77855 | Canola | cytosol | 42.65 | 41.67 |
| CDY30926 | Canola | cytosol | 42.65 | 41.67 |
| CDY38404 | Canola | endoplasmic reticulum | 43.13 | 41.55 |
| CDX80224 | Canola | cytosol | 41.71 | 41.31 |
| CDY09249 | Canola | cytosol | 42.18 | 41.2 |
| CDX88725 | Canola | cytosol | 42.18 | 41.2 |
| CDX88726 | Canola | cytosol | 42.18 | 41.2 |
| CDY38055 | Canola | cytosol | 45.97 | 40.93 |
| CDX86045 | Canola | cytosol | 41.71 | 40.74 |
| CDX85225 | Canola | cytosol | 30.33 | 40.51 |
| CDY11256 | Canola | cytosol | 40.76 | 39.63 |
| CDY41572 | Canola | cytosol | 40.76 | 39.45 |
| CDY54609 | Canola | cytosol | 40.28 | 38.99 |
| CDX80871 | Canola | cytosol | 40.76 | 38.56 |
| CDY09621 | Canola | cytosol | 42.65 | 37.04 |
| CDY34032 | Canola | cytosol | 24.17 | 34.69 |
| CDY07577 | Canola | cytosol | 41.71 | 32.96 |
| CDY70243 | Canola | cytosol | 23.7 | 32.89 |
| CDY52746 | Canola | cytosol | 41.71 | 32.71 |
| CDX94925 | Canola | cytosol | 24.17 | 31.1 |
| CDX99131 | Canola | cytosol | 41.71 | 28.57 |
Protein Annotations
| MapMan:22.8.1.2 | Gene3D:3.40.50.300 | GO:A0A078F8I6 | UniProt:A0A078F8I6 | EnsemblPlants:CDY09641 | ProteinID:CDY09641 |
| ProteinID:CDY09641.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00031287001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF597 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EB531D |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g34200DBnaC07g34200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8I6]
Coordinates
chrLK031998:+:147734..149146
Molecular Weight (calculated)
23180.6 Da
IEP (calculated)
7.028
GRAVY (calculated)
-0.233
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPLKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVT TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IEDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVT TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IEDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G
001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G
Arabidopsis Description
RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.