CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005350.2.1	Tomato	cytosol	92.8	80.56
TraesCS1D01G285200.1	Wheat	cytosol	96.8	56.54
TraesCS1B01G295600.1	Wheat	cytosol	96.8	56.54
TraesCS1A01G286200.1	Wheat	cytosol	96.8	56.54
CDX88726	Canola	cytosol	97.6	56.48
CDX88725	Canola	cytosol	97.6	56.48
Zm00001d038380_P001	Maize	extracellular, plasma membrane	96.8	56.28
EES19652	Sorghum	cytosol	96.8	56.28
Os07t0239400-01	Rice	plasma membrane	96.8	56.28
Zm00001d010538_P005	Maize	cytosol	96.8	56.28
Os03t0819900-01	Rice	plasma membrane	96.0	56.07
KRH29838	Soybean	endoplasmic reticulum	96.0	56.07
KRH24835	Soybean	cytosol	96.0	56.07
EER93195	Sorghum	cytosol	96.0	56.07
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	96.8	56.02
TraesCS3A01G356000.3	Wheat	plastid	96.8	56.02
PGSC0003DMT400040138	Potato	cytosol	96.8	56.02
TraesCS3B01G388900.1	Wheat	cytosol	96.8	56.02
VIT_06s0004g04200.t01	Wine grape	cytosol	96.8	56.02
Os05t0461300-01	Rice	plastid	96.8	56.02
GSMUA_Achr11P...	Banana	cytosol	96.8	56.02
GSMUA_Achr10P...	Banana	cytosol	96.8	56.02
CDX68365	Canola	cytosol	96.8	56.02
CDY71506	Canola	cytosol	96.8	56.02
CDY31592	Canola	cytosol	96.8	56.02
AT5G59840.1	Thale cress	cytosol	96.8	56.02
CDX77855	Canola	cytosol	96.8	56.02
CDX86045	Canola	cytosol	96.8	56.02
CDY30926	Canola	cytosol	96.8	56.02
Zm00001d034638_P001	Maize	cytosol	96.0	55.81
KRH23030	Soybean	endoplasmic reticulum	96.0	55.81
KRH10292	Soybean	cytosol	96.0	55.81
GSMUA_Achr9P03220_001	Banana	cytosol	96.0	55.56
GSMUA_AchrUn_...	Banana	cytosol	96.0	55.56
GSMUA_Achr8P02620_001	Banana	cytosol	96.0	55.56
CDY09249	Canola	cytosol	96.0	55.56
GSMUA_Achr10P...	Banana	cytosol	96.0	55.56
GSMUA_Achr6P34270_001	Banana	cytosol	95.2	55.09
CDX80224	Canola	cytosol	93.6	54.93
TraesCS5A01G476400.1	Wheat	cytosol	93.6	54.67
TraesCS5B01G489300.1	Wheat	golgi	93.6	54.67
TraesCS5D01G489700.1	Wheat	cytosol	93.6	54.67
PGSC0003DMT400008917	Potato	cytosol	94.4	54.63
HORVU1Hr1G072070.1	Barley	cytosol	96.8	53.78
OQU88745	Sorghum	cytosol	96.0	53.1
CDY11256	Canola	cytosol	90.4	52.07
CDY41572	Canola	cytosol	88.8	50.92
TraesCS3D01G350000.3	Wheat	cytosol	96.8	50.84
CDX80871	Canola	cytosol	90.4	50.67
CDY54609	Canola	cytosol	88.0	50.46
CDY52746	Canola	cytosol	97.6	45.35
CDY07577	Canola	cytosol	96.8	45.32
CDY40564	Canola	cytosol	66.4	41.09
CDY33521	Canola	cytosol	66.4	41.09
CDX77748	Canola	cytosol	66.4	41.09
CDX76566	Canola	cytosol	66.4	41.09
CDY43436	Canola	cytosol	66.4	41.09
CDY28967	Canola	cytosol	66.4	41.09
CDY65880	Canola	cytosol	66.4	41.09
CDY67887	Canola	cytosol	66.4	40.89
CDX90468	Canola	cytosol	65.6	40.59
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	83.2	40.15
CDX99131	Canola	cytosol	96.8	39.29
CDX73855	Canola	cytosol	62.4	37.86
CDY47919	Canola	vacuole	62.4	37.86
CDY56593	Canola	cytosol	62.4	37.86
CDY52557	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	64.0	37.56
CDY34032	Canola	cytosol	44.0	37.41
CDY38404	Canola	endoplasmic reticulum	64.8	36.99
CDY38055	Canola	cytosol	68.8	36.29
HORVU3Hr1G086830.7	Barley	cytosol	76.8	36.23
CDY70243	Canola	cytosol	43.2	35.53
CDX94925	Canola	cytosol	44.0	33.54
CDY09621	Canola	cytosol	63.2	32.51
CDY50126	Canola	cytosol	49.6	29.52
CDY58166	Canola	cytosol	49.6	29.52
CDY35596	Canola	cytosol	49.6	29.38
CDY42961	Canola	cytosol	49.6	29.38
CDX75535	Canola	cytosol	49.6	29.38
CDY09641	Canola	cytosol	49.6	29.38
CDX69177	Canola	cytosol	49.6	29.38
CDX72559	Canola	cytosol	48.8	28.91
CDX85225	Canola	cytosol	36.0	28.48
CDY47039	Canola	plasma membrane	48.0	28.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078K2M1	UniProt:A0A078K2M1	EnsemblPlants:CDY72056	ProteinID:CDY72056
ProteinID:CDY72056.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00023404001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EF2C27	SEG:seg

Description

BnaCnng75770DBnaCnng75770D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K2M1]

Coordinates

chrLK048752:-:60..1282

Molecular Weight (calculated)

14290.1 Da

IEP (calculated)

9.405

GRAVY (calculated)

-0.224

Length

125 amino acids

Sequence
(BLAST)

001: MAAPPARGRA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD TKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKYR

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.