Factsheet for Os07t0239400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 18260611
plastid: 21433289
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0196500-01
Os01t0269100-01
Os02t0245100-01	peroxisome
Os05t0200280-01
Os06t0107000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	Os02t0245100-01	AT1G29260.1	23297417
AT3G46060.1	Os01t0269100-01	AT3G06540.1	21798944
AT3G46060.1	Os01t0196500-01	AT3G13720.1	21798944
AT3G46060.1	Os05t0200280-01	AT3G13720.1	21798944
AT3G46060.1	Os06t0107000-01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72056	Canola	cytosol	56.28	96.8
Os03t0819900-01	Rice	plasma membrane	95.81	96.26
Solyc06g005350.2.1	Tomato	cytosol	64.19	95.83
GSMUA_Achr9P03220_001	Banana	cytosol	94.42	93.98
GSMUA_Achr10P...	Banana	cytosol	94.42	93.98
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	93.95	93.52
GSMUA_AchrUn_...	Banana	cytosol	93.95	93.52
GSMUA_Achr6P34270_001	Banana	cytosol	93.95	93.52
VIT_08s0040g02490.t01	Wine grape	cytosol	93.49	93.06
PGSC0003DMT400040138	Potato	cytosol	93.49	93.06
Os05t0461300-01	Rice	plastid	93.49	93.06
GSMUA_Achr11P...	Banana	cytosol	93.49	93.06
VIT_13s0019g00520.t01	Wine grape	extracellular	93.02	92.59
KRH01606	Soybean	endoplasmic reticulum	92.56	92.13
KRH70501	Soybean	endoplasmic reticulum	92.56	92.13
KRH29838	Soybean	endoplasmic reticulum	91.63	92.06
VIT_06s0004g04200.t01	Wine grape	cytosol	92.09	91.67
Solyc09g010370.2.1	Tomato	extracellular, plastid	92.09	91.67
PGSC0003DMT400022823	Potato	cytosol	92.09	91.67
PGSC0003DMT400049296	Potato	cytosol	92.09	91.67
KRH24835	Soybean	cytosol	91.16	91.59
KRH36193	Soybean	endoplasmic reticulum, extracellular	91.63	91.2
GSMUA_Achr10P...	Banana	cytosol	91.63	91.2
GSMUA_Achr8P02620_001	Banana	cytosol	91.63	91.2
PGSC0003DMT400008917	Potato	cytosol	91.16	90.74
Bra019475.1-P	Field mustard	cytosol	91.16	90.74
CDY30926	Canola	cytosol	91.16	90.74
AT5G59840.1	Thale cress	cytosol	91.16	90.74
KRH23030	Soybean	endoplasmic reticulum	90.7	90.7
KRH10292	Soybean	cytosol	90.7	90.7
PGSC0003DMT400071317	Potato	cytosol	90.7	90.28
KRG90563	Soybean	cytosol	90.7	90.28
CDX86045	Canola	cytosol	90.7	90.28
OQU88745	Sorghum	cytosol	94.88	90.27
Solyc04g011360.2.1	Tomato	plastid	90.23	89.81
Solyc10g086350.1.1	Tomato	cytosol, nucleus	90.23	89.81
AT3G46060.1	Thale cress	cytosol	90.23	89.81
AT3G53610.3	Thale cress	cytosol	89.77	89.35
CDX68365	Canola	cytosol	89.77	89.35
CDX77855	Canola	cytosol	89.77	89.35
Bra002527.1-P	Field mustard	cytosol	89.77	89.35
CDY31592	Canola	cytosol	89.77	89.35
CDY71506	Canola	cytosol	89.77	89.35
Bra006690.1-P	Field mustard	cytosol	89.3	88.89
CDX88725	Canola	cytosol	88.84	88.43
CDX88726	Canola	cytosol	88.84	88.43
Bra033830.1-P	Field mustard	cytosol	79.07	88.08
CDX80224	Canola	cytosol	86.98	87.79
Bra020282.1-P	Field mustard	cytosol	86.05	85.65
CDY09249	Canola	cytosol	85.58	85.19
CDY34032	Canola	cytosol	53.49	78.23
CDY70243	Canola	cytosol	53.02	75.0
CDY07577	Canola	cytosol	90.23	72.66
CDY52746	Canola	cytosol	89.77	71.75
Bra003149.1-P	Field mustard	cytosol	89.77	71.75
CDX94925	Canola	cytosol	53.95	70.73
CDX99131	Canola	cytosol	91.16	63.64
Os02t0653800-01	Rice	plasma membrane	58.14	61.58
Os01t0179700-01	Rice	plasma membrane	58.14	61.58
Os01t0558600-01	Rice	plasma membrane	56.74	60.4
Os07t0195100-01	Rice	plasma membrane	73.95	58.24
Bra038265.1-P	Field mustard	cytosol	90.7	51.86
Os02t0586400-01	Rice	plasma membrane	41.86	42.86
Os04t0470100-01	Rice	plasma membrane	40.47	41.23
Os10t0208200-00	Rice	cytosol	36.74	37.26

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EntrezGene:4334590	EntrezGene:4342802	ProteinID:AAO65869.1	ProteinID:ABF99579.1
EMBL:AK068609	EMBL:AK111912	EMBL:AK112029	EMBL:AY579410	ProteinID:BAC80082.1	ProteinID:BAD30623.1
ProteinID:BAF13630.1	ProteinID:BAF21173.1	ProteinID:BAS87079.1	ProteinID:BAT00760.1	ProteinID:EEE60188.1	ProteinID:EEE66859.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306	GO:GO:0009987	GO:GO:0016787
GO:GO:0017157	EnsemblPlantsGene:Os07g0239400	EnsemblPlants:Os07t0239400-01	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	UniProt:Q7XHP7	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00001B3B31	RefSeq:XP_015627857.1	RefSeq:XP_015647647.1	SEG:seg	:

Description

small GTP-binding protein OsRab8A3Similar to Ethylene-responsive small GTP-binding protein. (Os07t0239400-01)

Coordinates

chr7:-:7742969..7746758

Molecular Weight (calculated)

23994.5 Da

IEP (calculated)

8.021

GRAVY (calculated)

-0.353

Length

215 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LAETDSKTED RTIKINKPEG
201: DAEATTLQKS ACCGS

Best Arabidopsis Sequence Match ( AT5G59840.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KSKGQALADE YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGS

Arabidopsis Description

Putative GTP-binding protein ara-3 [Source:UniProtKB/TrEMBL;Acc:Q9FJF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.