Factsheet for Os01t0558600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
golgi 3
mitochondrion 1
endoplasmic reticulum 3
plasma membrane 2
vacuole 2
extracellular 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 18260611
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03124	Sorghum	cytosol	98.02	97.54
HORVU3Hr1G048090.1	Barley	plasma membrane	97.52	97.04
TraesCS3A01G203100.1	Wheat	plastid	97.52	97.04
Zm00001d011162_P002	Maize	plasma membrane	97.52	97.04
TraesCS3B01G230700.1	Wheat	cytosol	95.54	87.33
TraesCS3D01G206600.1	Wheat	cytosol	95.54	87.33
Os01t0179700-01	Rice	plasma membrane	85.64	85.22
Os02t0653800-01	Rice	plasma membrane	85.64	85.22
Os03t0819900-01	Rice	plasma membrane	60.4	57.01
Os07t0239400-01	Rice	plasma membrane	60.4	56.74
Os05t0461300-01	Rice	plastid	59.9	56.02
Os02t0586400-01	Rice	plasma membrane	48.02	46.19
Os04t0470100-01	Rice	plasma membrane	47.52	45.5
Os10t0208200-00	Rice	cytosol	44.06	41.98
Os07t0195100-01	Rice	plasma membrane	51.49	38.1

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EntrezGene:4324675	EMBL:AK243597	ProteinID:BAD87657.1	ProteinID:BAD87942.1
ProteinID:BAF05250.1	ProteinID:BAS72697.1	ProteinID:EAZ12333.1	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0005886
GO:GO:0006810	GO:GO:0006888	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016787
EnsemblPlantsGene:Os01g0558600	EnsemblPlants:Os01t0558600-01	InterPro:P-loop_NTPase	UniProt:P40392	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF845	EMBL:S66160	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI00004C2A42	RefSeq:XP_015617308.1	:	:	:

Description

small GTP-binding protein OsRab1B2, Ras related protein 1Ras-related protein RIC1. (Os01t0558600-01)

Coordinates

chr1:-:21143578..21146346

Molecular Weight (calculated)

22477.6 Da

IEP (calculated)

4.897

GRAVY (calculated)

-0.311

Length

202 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLAENRV VSYEAGKALA DEIGIPFLET SAKDATNVEK AFMTMAGEIK NRMASQPATN ASKPATVQMR GQPVAQQSSC
201: CS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.