Factsheet for Os02t0586400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

plasma membrane: 18260611
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G051470.1	Barley	cytosol	99.05	99.05
TraesCS6D01G188500.1	Wheat	golgi	99.05	99.05
TraesCS6B01G230400.2	Wheat	cytosol	99.05	99.05
TraesCS6A01G207100.1	Wheat	cytosol	99.05	99.05
EES05332	Sorghum	cytosol	97.14	97.14
Solyc10g007700.2.1	Tomato	plastid	92.86	92.42
PGSC0003DMT400079822	Potato	cytosol	92.38	91.94
Bra021065.1-P	Field mustard	cytosol	91.9	91.9
CDY50126	Canola	cytosol	91.9	91.9
CDY58166	Canola	cytosol	91.9	91.9
PGSC0003DMT400020113	Potato	cytosol	91.9	91.47
Solyc12g011130.1.1	Tomato	cytosol	91.9	91.47
Zm00001d017026_P003	Maize	cytosol, endoplasmic reticulum, nucleus	97.14	90.27
Os04t0470100-01	Rice	plasma membrane	90.0	89.57
AT4G17160.1	Thale cress	cytosol	79.52	81.46
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	51.9	78.42
Zm00001d050915_P004	Maize	cytosol	89.05	75.4
Os10t0208200-00	Rice	cytosol	67.62	66.98
Os01t0558600-01	Rice	plasma membrane	46.19	48.02
Os02t0653800-01	Rice	plasma membrane	44.29	45.81
Os01t0179700-01	Rice	plasma membrane	44.29	45.81
Os07t0239400-01	Rice	plasma membrane	42.86	41.86
Os05t0461300-01	Rice	plastid	42.86	41.67
Os03t0819900-01	Rice	plasma membrane	42.38	41.59
Os07t0195100-01	Rice	plasma membrane	37.14	28.57

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EntrezGene:4329809	EMBL:AK061099	EMBL:AK100102	ProteinID:BAD17483.1
ProteinID:BAF09181.1	ProteinID:BAS79466.1	ProteinID:EAZ23604.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0030100	EnsemblPlantsGene:Os02g0586400	EnsemblPlants:Os02t0586400-01	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843	UniProt:Q6YY17	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI000035AF0E	RefSeq:XP_015626284.1	SEG:seg	:	:

Description

small GTP-binding protein OsRab2A2Similar to Small GTP-binding protein. (Os02t0586400-01)

Coordinates

chr2:+:22599446..22602113

Molecular Weight (calculated)

23018.3 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.203

Length

210 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTVMLIGNK CDLSHRRAVS YEEGEQFAKE HGLVFMEASA KTAQNVEEAF IKTAGTIYKK IQDGVFDVSN ESYGIKVGYA VPNASGGGAG
201: SSSQGGGCCG

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.