Factsheet for Os04t0470100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

plasma membrane: 18260611
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025660_P001	Maize	plasma membrane, plastid	94.31	94.76
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	94.31	94.76
TraesCS2D01G331300.1	Wheat	golgi, plastid	91.47	91.9
TraesCS2B01G350600.1	Wheat	cytosol	91.47	91.9
TraesCS2A01G331600.1	Wheat	cytosol	91.47	91.9
Os02t0586400-01	Rice	plasma membrane	89.57	90.0
Solyc10g007700.2.1	Tomato	plastid	87.68	87.68
Solyc12g011130.1.1	Tomato	cytosol	87.2	87.2
PGSC0003DMT400079822	Potato	cytosol	87.2	87.2
PGSC0003DMT400020113	Potato	cytosol	87.2	87.2
Bra021065.1-P	Field mustard	cytosol	86.73	87.14
CDY58166	Canola	cytosol	86.73	87.14
CDY50126	Canola	cytosol	86.73	87.14
AT4G17160.1	Thale cress	cytosol	76.78	79.02
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	50.71	76.98
Os10t0208200-00	Rice	cytosol	66.82	66.51
Os01t0558600-01	Rice	plasma membrane	45.5	47.52
Os02t0653800-01	Rice	plasma membrane	44.55	46.31
Os01t0179700-01	Rice	plasma membrane	44.55	46.31
Os07t0239400-01	Rice	plasma membrane	41.23	40.47
Os05t0461300-01	Rice	plastid	41.23	40.28
Os03t0819900-01	Rice	plasma membrane	40.76	40.19
Os07t0195100-01	Rice	plasma membrane	36.97	28.57

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EntrezGene:4336117	EMBL:AK059799	ProteinID:BAF14962.1	ProteinID:BAS89634.1
ProteinID:CAE03047.2	ProteinID:EEE61162.1	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0016020	GO:GO:0016787	EnsemblPlantsGene:Os04g0470100	EnsemblPlants:Os04t0470100-01
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843
UniProt:Q7XQN5	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000021C61E	RefSeq:XP_015635422.1	SEG:seg

Description

small GTP-binding protein OsRab2A1Similar to Small GTP binding protein Rab2. (Os04t0470100-01)

Coordinates

chr4:+:23492940..23495299

Molecular Weight (calculated)

23085.3 Da

IEP (calculated)

7.550

GRAVY (calculated)

-0.231

Length

211 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITV DSRPVKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLVGNK SDLSHRRAVS YEEGEQFAKE HGLIFMEASA KTAQNVEEAF VKTAGAIYKK IQDGVFDLSN EANGIKLGYT VPGQSGGAGS
201: SSSQGGGCCS S

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.