Factsheet for VIT_08s0040g02490.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010370.2.1	Tomato	extracellular, plastid	93.98	93.98
PGSC0003DMT400022823	Potato	cytosol	93.98	93.98
VIT_06s0004g04200.t01	Wine grape	cytosol	93.98	93.98
VIT_13s0019g00520.t01	Wine grape	extracellular	93.98	93.98
Os07t0239400-01	Rice	plasma membrane	93.06	93.49
PGSC0003DMT400049296	Potato	cytosol	92.59	92.59
GSMUA_Achr6P34270_001	Banana	cytosol	92.13	92.13
GSMUA_Achr9P03220_001	Banana	cytosol	91.67	91.67
GSMUA_Achr11P...	Banana	cytosol	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol	91.67	91.67
EES19652	Sorghum	cytosol	91.2	91.63
Zm00001d010538_P005	Maize	cytosol	91.2	91.63
Zm00001d038380_P001	Maize	extracellular, plasma membrane	91.2	91.63
Os03t0819900-01	Rice	plasma membrane	90.74	91.59
VIT_08s0007g04750.t01	Wine grape	cytosol	91.2	91.2
GSMUA_AchrUn_...	Banana	cytosol	91.2	91.2
Os05t0461300-01	Rice	plastid	91.2	91.2
EER93195	Sorghum	cytosol	90.28	91.12
Solyc10g086350.1.1	Tomato	cytosol, nucleus	90.74	90.74
Zm00001d034638_P001	Maize	cytosol	90.28	90.7
TraesCS1A01G286200.1	Wheat	cytosol	89.81	90.65
TraesCS1D01G285200.1	Wheat	cytosol	89.81	90.65
TraesCS1B01G295600.1	Wheat	cytosol	89.81	90.65
AT3G53610.3	Thale cress	cytosol	90.28	90.28
TraesCS3A01G356000.3	Wheat	plastid	89.35	89.35
TraesCS3B01G388900.1	Wheat	cytosol	89.35	89.35
GSMUA_Achr10P...	Banana	cytosol	89.35	89.35
TraesCS5B01G489300.1	Wheat	golgi	88.43	89.25
GSMUA_Achr8P02620_001	Banana	cytosol	88.89	88.89
TraesCS5A01G476400.1	Wheat	cytosol	87.96	88.78
TraesCS5D01G489700.1	Wheat	cytosol	87.5	88.32
OQU88745	Sorghum	cytosol	91.2	87.17
HORVU1Hr1G072070.1	Barley	cytosol	85.65	82.22
TraesCS3D01G350000.3	Wheat	cytosol	89.35	81.09
CDY07577	Canola	cytosol	93.06	75.28
Bra003149.1-P	Field mustard	cytosol	92.59	74.35
CDY52746	Canola	cytosol	92.59	74.35
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	81.94	68.34
HORVU3Hr1G086830.7	Barley	cytosol	76.85	62.64
VIT_00s1372g00020.t01	Wine grape	cytosol	55.56	60.61
VIT_16s0013g00520.t01	Wine grape	extracellular	56.02	59.61
VIT_12s0035g01150.t01	Wine grape	vacuole	53.24	56.93
VIT_00s0878g00030.t01	Wine grape	cytosol	26.39	55.88
VIT_15s0021g01410.t01	Wine grape	cytosol	42.59	44.88
VIT_12s0057g01470.t01	Wine grape	extracellular	40.74	41.71
VIT_14s0066g00180.t01	Wine grape	cytosol	40.28	41.63
VIT_00s1506g00010.t01	Wine grape	cytosol	23.15	33.56
VIT_00s0455g00010.t01	Wine grape	cytosol	12.96	21.05

Protein Annotations

EntrezGene:100263639	wikigene:100263639	MapMan:22.8.1.5	Gene3D:3.40.50.300	ProteinID:CBI32682	ProteinID:CBI32682.3
UniProt:D7TQG2	EMBL:FN596008	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0017157	EntrezGene:LOC100263639	wikigene:LOC100263639
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF829
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC53876	TIGR:TC59795	TIGRFAMs:TIGR00231	UniParc:UPI00015CA995
ArrayExpress:VIT_08s0040g02490	EnsemblPlantsGene:VIT_08s0040g02490	EnsemblPlants:VIT_08s0040g02490.t01	unigene:Vvi.25388	unigene:Vvi.2664	RefSeq:XP_002278842
RefSeq:XP_002278842.1	RefSeq:XP_010653511.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:13540774..13545603

Molecular Weight (calculated)

23903.3 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.319

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LAETDSKAEP HTIRINPPDH
201: AAGSAETPAK SACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.