Factsheet for VIT_00s0878g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
extracellular 2
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, endoplasmic reticulum, golgi, plasma membrane, vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003347_P003	Maize	cytosol	86.27	47.06
VIT_12s0057g01470.t01	Wine grape	extracellular	87.25	42.18
VIT_14s0066g00180.t01	Wine grape	cytosol	84.31	41.15
VIT_12s0035g01150.t01	Wine grape	vacuole	54.9	27.72
VIT_16s0013g00520.t01	Wine grape	extracellular	54.9	27.59
VIT_00s1372g00020.t01	Wine grape	cytosol	52.94	27.27
VIT_06s0004g04200.t01	Wine grape	cytosol	55.88	26.39
VIT_08s0007g04750.t01	Wine grape	cytosol	55.88	26.39
VIT_08s0040g02490.t01	Wine grape	cytosol	55.88	26.39
VIT_13s0019g00520.t01	Wine grape	extracellular	55.88	26.39
VIT_15s0021g01410.t01	Wine grape	cytosol	47.06	23.41
VIT_00s1506g00010.t01	Wine grape	cytosol	28.43	19.46
VIT_00s0455g00010.t01	Wine grape	cytosol	1.96	1.5

Protein Annotations

EntrezGene:100246310	wikigene:100246310	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CBI29569	ProteinID:CBI29569.3
UniProt:D7TGE4	EMBL:FN595845	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0016020	GO:GO:0016787	EntrezGene:LOC100246310	wikigene:LOC100246310
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF869
SMART:SM00173	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001BE30C3	ArrayExpress:VIT_00s0878g00030	EnsemblPlantsGene:VIT_00s0878g00030	EnsemblPlants:VIT_00s0878g00030.t01	RefSeq:XP_002269525	RefSeq:XP_002269525.2

Description

No Description!

Coordinates

chrUn:+:36431206..36432316

Molecular Weight (calculated)

11690.2 Da

IEP (calculated)

9.318

GRAVY (calculated)

0.066

Length

102 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARIITI DSKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR YHFYLNLSHA
101: MQ

Best Arabidopsis Sequence Match ( AT4G17160.1 )
(BLAST)

001: MSYAYRFKYI IIGDTGVGKS CLLLKFTDKR FQAVHDLTIG VEFGAKTITI DNKPIKLQIW DTAGQESFRS VTRSYYRGRA GTLLVYDITR RETFNHLASW
101: LEEARQHASE NMTTMLIGNK CDLEDKRTVS TEEGEQFARE HGLIFMEASA KTAHNVEEAF VETAATIYKR IQDGVVDEAN EPGITPGPFG GKDASSSQQR
201: RGCCG

Arabidopsis Description

RABB1ARABB1a [Source:UniProtKB/TrEMBL;Acc:A0A178UXW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.