Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g04890.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35860.1 | VIT_08s0007g04890.t01 | AT2G36840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93957 | Soybean | endoplasmic reticulum | 94.26 | 93.36 |
| KRH58242 | Soybean | endoplasmic reticulum | 93.78 | 92.89 |
| PGSC0003DMT400032908 | Potato | cytosol | 93.78 | 92.89 |
| Bra017733.1-P | Field mustard | cytosol | 93.3 | 92.42 |
| CDY47039 | Canola | plasma membrane | 93.3 | 92.42 |
| Solyc02g093530.2.1 | Tomato | plastid | 93.3 | 92.42 |
| Bra011645.1-P | Field mustard | cytosol | 92.82 | 91.94 |
| CDX69177 | Canola | cytosol | 92.82 | 91.94 |
| CDX75535 | Canola | cytosol | 92.82 | 91.94 |
| AT4G35860.1 | Thale cress | cytosol | 92.34 | 91.47 |
| CDX72559 | Canola | cytosol | 91.87 | 91.0 |
| VIT_12s0057g01470.t01 | Wine grape | extracellular | 87.56 | 86.73 |
| VIT_00s1506g00010.t01 | Wine grape | cytosol | 60.77 | 85.23 |
| VIT_00s0878g00030.t01 | Wine grape | cytosol | 41.15 | 84.31 |
| VIT_00s1372g00020.t01 | Wine grape | cytosol | 45.45 | 47.98 |
| VIT_16s0013g00520.t01 | Wine grape | extracellular | 46.41 | 47.78 |
| VIT_00s0455g00010.t01 | Wine grape | cytosol | 29.67 | 46.62 |
| VIT_12s0035g01150.t01 | Wine grape | vacuole | 44.98 | 46.53 |
| VIT_13s0019g00520.t01 | Wine grape | extracellular | 43.54 | 42.13 |
| VIT_08s0007g04750.t01 | Wine grape | cytosol | 42.58 | 41.2 |
| VIT_06s0004g04200.t01 | Wine grape | cytosol | 42.58 | 41.2 |
| VIT_15s0021g01410.t01 | Wine grape | cytosol | 40.19 | 40.98 |
| VIT_08s0040g02490.t01 | Wine grape | cytosol | 41.63 | 40.28 |
Protein Annotations
| EntrezGene:100260965 | wikigene:100260965 | MapMan:22.8.1.2 | Gene3D:3.40.50.300 | ProteinID:CBI34832 | ProteinID:CBI34832.3 |
| UniProt:D7TWF7 | EMBL:FN596252 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005773 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030100 |
| EntrezGene:LOC100260965 | wikigene:LOC100260965 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF597 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGR:TC56716 | TIGRFAMs:TIGR00231 | UniParc:UPI00015C9BA5 |
| ArrayExpress:VIT_14s0066g00180 | EnsemblPlantsGene:VIT_14s0066g00180 | EnsemblPlants:VIT_14s0066g00180.t01 | unigene:Vvi.7756 | RefSeq:XP_002270701 | RefSeq:XP_002270701.1 |
Description
No Description!
Coordinates
chr14:+:26750364..26755053
Molecular Weight (calculated)
23218.6 Da
IEP (calculated)
7.450
GRAVY (calculated)
-0.312
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTI DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMTIMLIGNK CDLAHRRAVS KEEGEQFAKE NGLLFLEASA RTAQNVEEAF IKTAARILQN IQEGVFDLSN ESSGIKVGYG RPQGPSGDGT
201: VSQRGGCCN
101: LEDARQHANP NMTIMLIGNK CDLAHRRAVS KEEGEQFAKE NGLLFLEASA RTAQNVEEAF IKTAARILQN IQEGVFDLSN ESSGIKVGYG RPQGPSGDGT
201: VSQRGGCCN
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
Arabidopsis Description
RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.