Factsheet for VIT_16s0013g00520.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1372g00020.t01	Wine grape	cytosol	93.6	95.96
Os02t0653800-01	Rice	plasma membrane	93.1	93.1
Os01t0179700-01	Rice	plasma membrane	93.1	93.1
GSMUA_Achr2P18340_001	Banana	plasma membrane	92.61	93.07
EES07529	Sorghum	cytosol	92.12	92.12
GSMUA_Achr11P...	Banana	cytosol	91.63	91.63
TraesCS3D01G056500.1	Wheat	golgi	91.13	91.13
GSMUA_Achr8P15030_001	Banana	cytosol	90.64	90.64
Solyc05g052070.2.1	Tomato	unclear	90.15	90.15
TraesCS3D01G056600.1	Wheat	plastid	89.66	89.66
TraesCS3B01G070300.2	Wheat	cytosol	89.66	89.66
TraesCS3A01G056600.1	Wheat	cytosol	89.66	89.66
TraesCS3A01G056500.1	Wheat	cytosol	89.66	89.66
PGSC0003DMT400041326	Potato	cytosol	89.66	89.66
Bra022113.1-P	Field mustard	cytosol	89.16	89.6
Bra017497.1-P	Field mustard	cytosol	89.16	89.6
Bra024956.1-P	Field mustard	cytosol	88.67	89.11
Bra012658.1-P	Field mustard	cytosol	88.18	88.61
AT1G02130.1	Thale cress	cytosol	88.18	88.18
HORVU3Hr1G010800.8	Barley	cytosol	70.44	87.73
TraesCS3A01G056800.1	Wheat	cytosol	76.85	82.54
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	91.13	81.5
VIT_12s0035g01150.t01	Wine grape	vacuole	76.85	77.23
CDY38055	Canola	cytosol	88.67	75.95
TraesCS3A01G056900.1	Wheat	mitochondrion	58.13	70.66
Zm00001d051336_P001	Maize	plastid	90.15	67.28
GSMUA_Achr7P06570_001	Banana	cytosol	91.13	67.27
HORVU3Hr1G010780.1	Barley	plasma membrane	91.13	66.31
Bra040162.1-P	Field mustard	cytosol	87.19	64.6
TraesCS3A01G056700.1	Wheat	cytosol	79.31	63.14
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	92.12	62.13
VIT_15s0021g01410.t01	Wine grape	cytosol	62.56	61.95
VIT_06s0004g04200.t01	Wine grape	cytosol	61.58	57.87
VIT_13s0019g00520.t01	Wine grape	extracellular	61.58	57.87
VIT_08s0007g04750.t01	Wine grape	cytosol	60.59	56.94
VIT_08s0040g02490.t01	Wine grape	cytosol	59.61	56.02
VIT_00s0878g00030.t01	Wine grape	cytosol	27.59	54.9
VIT_14s0066g00180.t01	Wine grape	cytosol	47.78	46.41
VIT_12s0057g01470.t01	Wine grape	extracellular	47.78	45.97
Zm00001d017456_P003	Maize	cytosol	90.64	45.89
VIT_00s1506g00010.t01	Wine grape	cytosol	30.05	40.94
VIT_00s0455g00010.t01	Wine grape	cytosol	19.21	29.32

Protein Annotations

EntrezGene:100245986	wikigene:100245986	MapMan:22.8.1.4	Gene3D:3.40.50.300	ProteinID:CBI38569	ProteinID:CBI38569.3
UniProt:D7U755	EMBL:FN596738	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888
GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	EntrezGene:LOC100245986	wikigene:LOC100245986	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGR:TC55486	TIGR:TC60621	TIGR:TC68576	TIGRFAMs:TIGR00231	UniParc:UPI00015C85F4
ArrayExpress:VIT_16s0013g00520	EnsemblPlantsGene:VIT_16s0013g00520	EnsemblPlants:VIT_16s0013g00520.t01	unigene:Vvi.9399	RefSeq:XP_002281150	RefSeq:XP_002281150.1

Description

No Description!

Coordinates

chr16:+:5694463..5702976

Molecular Weight (calculated)

22655.8 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.314

Length

203 amino acids

Sequence
(BLAST)

001: MNQEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTANKV VSYETAKAFA DEIGIPFMET SAKNATNVEQ AFMAMAADIK TRMASQPAMN NARPPSVQLQ GQPVNQKSGC
201: CSS

Best Arabidopsis Sequence Match ( AT4G17530.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPPTVQIRG QPVNQQSGCC
201: SS

Arabidopsis Description

RABD2CRAB1C [Source:UniProtKB/TrEMBL;Acc:A0A178USY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.