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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
  • endoplasmic reticulum 3
  • golgi 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra019100.1-P
Bra026423.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G47200.1 Bra010452.1-P AT4G25660.1 21798944
AT5G47200.1 Bra013908.1-P AT4G25660.1 21798944
AT5G47200.1 Bra013910.1-P AT4G25660.1 21798944
AT5G47200.1 Bra019100.1-P AT4G26550.1 21798944
AT5G47200.1 Bra026423.1-P AT4G26550.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43436 Canola cytosol 100.0 100.0
Bra022113.1-P Field mustard cytosol 100.0 100.0
Bra024956.1-P Field mustard cytosol 99.01 99.01
AT5G47200.1 Thale cress cytosol 98.51 98.51
Bra012658.1-P Field mustard cytosol 98.02 98.02
PGSC0003DMT400067463 Potato cytosol 91.58 91.13
Solyc08g078070.2.1 Tomato nucleus 91.58 91.13
KRH57496 Soybean endoplasmic reticulum 90.59 90.59
KRH04201 Soybean cytosol, extracellular 90.59 90.59
VIT_00s1372g00020.t01 Wine grape cytosol 88.61 90.4
Os01t0179700-01 Rice plasma membrane 89.6 89.16
GSMUA_Achr11P... Banana cytosol 89.6 89.16
Os02t0653800-01 Rice plasma membrane 89.6 89.16
VIT_16s0013g00520.t01 Wine grape extracellular 89.6 89.16
GSMUA_Achr2P18340_001 Banana plasma membrane 89.11 89.11
EES07529 Sorghum cytosol 89.11 88.67
GSMUA_Achr8P15030_001 Banana cytosol 89.11 88.67
PGSC0003DMT400034028 Potato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 88.61 88.18
Solyc05g053940.2.1 Tomato nucleus, plastid, unclear 88.61 88.18
PGSC0003DMT400041326 Potato cytosol 87.13 86.7
Solyc05g052070.2.1 Tomato unclear 87.13 86.7
TraesCS3D01G056500.1 Wheat golgi 86.63 86.21
TraesCS3A01G056600.1 Wheat cytosol 86.63 86.21
TraesCS3D01G056600.1 Wheat plastid 86.63 86.21
TraesCS3B01G070300.2 Wheat cytosol 86.63 86.21
KRH01059 Soybean endoplasmic reticulum 85.64 85.64
KRH66494 Soybean endoplasmic reticulum 85.64 85.22
KRH40178 Soybean endoplasmic reticulum 85.15 85.15
TraesCS3A01G056500.1 Wheat cytosol 85.15 84.73
Solyc01g090170.2.1 Tomato unclear 84.65 84.24
HORVU3Hr1G010800.8 Barley cytosol 66.34 82.21
TraesCS3A01G056800.1 Wheat cytosol 73.27 78.31
GSMUA_Achr1P04400_001 Banana endoplasmic reticulum, extracellular, plasma membrane 86.14 76.65
KRH48822 Soybean cytosol, endoplasmic reticulum 58.42 74.68
Bra001418.1-P Field mustard cytosol, extracellular 74.75 73.3
Bra038676.1-P Field mustard vacuole 74.75 73.3
Bra040162.1-P Field mustard cytosol 95.05 70.07
GSMUA_Achr7P06570_001 Banana cytosol 90.1 66.18
TraesCS3A01G056900.1 Wheat mitochondrion 53.96 65.27
Zm00001d051336_P001 Maize plastid 86.63 64.34
HORVU3Hr1G010780.1 Barley plasma membrane 86.63 62.72
GSMUA_Achr11P... Banana endoplasmic reticulum, plastid 90.59 60.8
TraesCS3A01G056700.1 Wheat cytosol 74.75 59.22
VIT_15s0021g01410.t01 Wine grape cytosol 58.91 58.05
Bra019475.1-P Field mustard cytosol 61.39 57.41
Bra002527.1-P Field mustard cytosol 60.4 56.48
Bra006690.1-P Field mustard cytosol 59.9 56.02
Bra020282.1-P Field mustard cytosol 59.41 55.56
Bra033830.1-P Field mustard cytosol 52.97 55.44
Bra005767.1-P Field mustard cytosol 58.91 54.84
Bra029803.1-P Field mustard cytosol 57.92 51.77
Bra011645.1-P Field mustard cytosol 47.03 45.02
Bra003149.1-P Field mustard cytosol 59.9 44.98
Bra021065.1-P Field mustard cytosol 46.53 44.76
Bra017733.1-P Field mustard cytosol 46.53 44.55
Bra026231.1-P Field mustard cytosol 46.04 44.08
Zm00001d017456_P003 Maize cytosol 87.13 43.89
Bra038265.1-P Field mustard cytosol 60.89 32.71
Protein Annotations
MapMan:22.8.1.4Gene3D:3.40.50.300EnsemblPlantsGene:Bra017497EnsemblPlants:Bra017497.1EnsemblPlants:Bra017497.1-PGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0016787
UniProt:M4DLW6InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073
PANTHER:PTHR24073:SF666SMART:SM00173SMART:SM00174SMART:SM00175SMART:SM00176SMART:SM00177
SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00019AA8E0:
Description
AT5G47200 (E=8e-112) ATRABD2B, ATRAB1A | ATRAB1A; GTP binding
Coordinates
chrA09:-:15801350..15802898
Molecular Weight (calculated)
22345.3 Da
IEP (calculated)
4.850
GRAVY (calculated)
-0.337
Length
202 amino acids
Sequence
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAQAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPSGG AKPPTVQIRG QPVNQQSGCC
201: SS
Best Arabidopsis Sequence Match ( AT5G47200.1 )
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKNDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG AKPPTVQIRG QPVNQQSGCC
201: SS
Arabidopsis Description
RABD2BRas-related protein RABD2b [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.