Factsheet for PGSC0003DMT400041326

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052070.2.1	Tomato	unclear	98.52	98.52
TraesCS3D01G056500.1	Wheat	golgi	89.66	89.66
VIT_16s0013g00520.t01	Wine grape	extracellular	89.66	89.66
Os02t0653800-01	Rice	plasma membrane	89.16	89.16
Os01t0179700-01	Rice	plasma membrane	89.16	89.16
PGSC0003DMT400067463	Potato	cytosol	89.16	89.16
GSMUA_Achr11P...	Banana	cytosol	88.67	88.67
AT1G02130.1	Thale cress	cytosol	88.67	88.67
EES07529	Sorghum	cytosol	88.18	88.18
TraesCS3A01G056500.1	Wheat	cytosol	88.18	88.18
GSMUA_Achr2P18340_001	Banana	plasma membrane	87.68	88.12
TraesCS3A01G056600.1	Wheat	cytosol	87.68	87.68
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	87.68	87.68
TraesCS3B01G070300.2	Wheat	cytosol	87.68	87.68
TraesCS3D01G056600.1	Wheat	plastid	87.68	87.68
Bra022113.1-P	Field mustard	cytosol	86.7	87.13
Bra017497.1-P	Field mustard	cytosol	86.7	87.13
GSMUA_Achr8P15030_001	Banana	cytosol	86.7	86.7
Bra012658.1-P	Field mustard	cytosol	85.71	86.14
Bra024956.1-P	Field mustard	cytosol	85.71	86.14
HORVU3Hr1G010800.8	Barley	cytosol	66.01	82.21
TraesCS3A01G056800.1	Wheat	cytosol	74.38	79.89
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	86.21	77.09
PGSC0003DMT400064019	Potato	cytosol, extracellular	75.86	76.24
CDY38055	Canola	cytosol	88.67	75.95
TraesCS3A01G056900.1	Wheat	mitochondrion	55.17	67.07
HORVU3Hr1G010780.1	Barley	plasma membrane	89.66	65.23
GSMUA_Achr7P06570_001	Banana	cytosol	87.68	64.73
Zm00001d051336_P001	Maize	plastid	85.71	63.97
Bra040162.1-P	Field mustard	cytosol	83.25	61.68
TraesCS3A01G056700.1	Wheat	cytosol	77.34	61.57
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	89.16	60.13
PGSC0003DMT400040138	Potato	cytosol	61.08	57.41
PGSC0003DMT400008917	Potato	cytosol	59.61	56.02
PGSC0003DMT400071317	Potato	cytosol	59.11	55.56
PGSC0003DMT400049296	Potato	cytosol	59.11	55.56
PGSC0003DMT400022823	Potato	cytosol	59.11	55.56
PGSC0003DMT400032908	Potato	cytosol	50.25	48.34
PGSC0003DMT400079822	Potato	cytosol	48.77	46.92
PGSC0003DMT400020113	Potato	cytosol	48.77	46.92
PGSC0003DMT400054721	Potato	cytosol	35.96	44.24
Zm00001d017456_P003	Maize	cytosol	86.21	43.64

Protein Annotations

EntrezGene:102587256	MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1BB74	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400016002	PGSC:PGSC0003DMG400016002	EnsemblPlants:PGSC0003DMT400041326	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000294D376
RefSeq:XP_006365340.1	:	:	:	:	:

Description

Small GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016002]

Coordinates

chr5:-:47337369..47340997

Molecular Weight (calculated)

22649.7 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.385

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDI TDQESFNNVK
101: QWLSEIDRYA SENVNKLLVG NKSDLNDNRA VSYDTAKAFA DEIGIPFMEA SAKSATNVEQ AFMAMAAEIK NRMATQPTSN NAKPPTVQIR GQPVNQKSGC
201: CSN

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.