Factsheet for Solyc05g052070.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041326	Potato	cytosol	98.52	98.52
TraesCS3D01G056500.1	Wheat	golgi	90.64	90.64
Os02t0653800-01	Rice	plasma membrane	90.15	90.15
Os01t0179700-01	Rice	plasma membrane	90.15	90.15
Solyc08g078070.2.1	Tomato	nucleus	90.15	90.15
VIT_16s0013g00520.t01	Wine grape	extracellular	90.15	90.15
AT1G02130.1	Thale cress	cytosol	89.66	89.66
GSMUA_Achr11P...	Banana	cytosol	89.16	89.16
EES07529	Sorghum	cytosol	89.16	89.16
TraesCS3A01G056500.1	Wheat	cytosol	89.16	89.16
TraesCS3B01G070300.2	Wheat	cytosol	88.67	88.67
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	88.67	88.67
TraesCS3A01G056600.1	Wheat	cytosol	88.67	88.67
TraesCS3D01G056600.1	Wheat	plastid	88.67	88.67
GSMUA_Achr2P18340_001	Banana	plasma membrane	87.68	88.12
GSMUA_Achr8P15030_001	Banana	cytosol	87.19	87.19
Bra022113.1-P	Field mustard	cytosol	86.7	87.13
Bra017497.1-P	Field mustard	cytosol	86.7	87.13
Bra012658.1-P	Field mustard	cytosol	85.71	86.14
Bra024956.1-P	Field mustard	cytosol	85.71	86.14
HORVU3Hr1G010800.8	Barley	cytosol	67.0	83.44
Solyc01g090170.2.1	Tomato	unclear	83.25	83.25
TraesCS3A01G056800.1	Wheat	cytosol	75.37	80.95
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	87.19	77.97
CDY38055	Canola	cytosol	89.66	76.79
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	75.86	76.24
TraesCS3A01G056900.1	Wheat	mitochondrion	55.66	67.66
HORVU3Hr1G010780.1	Barley	plasma membrane	90.64	65.95
GSMUA_Achr7P06570_001	Banana	cytosol	88.18	65.09
Zm00001d051336_P001	Maize	plastid	86.7	64.71
Solyc06g005350.2.1	Tomato	cytosol	44.34	62.5
Bra040162.1-P	Field mustard	cytosol	83.25	61.68
TraesCS3A01G056700.1	Wheat	cytosol	77.34	61.57
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	89.66	60.47
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	60.59	56.94
Solyc10g086350.1.1	Tomato	cytosol, nucleus	59.11	55.56
Solyc09g010370.2.1	Tomato	extracellular, plastid	59.11	55.56
Solyc04g011360.2.1	Tomato	plastid	58.62	55.09
Solyc02g093530.2.1	Tomato	plastid	50.74	48.82
Solyc12g011130.1.1	Tomato	cytosol	48.77	46.92
Solyc10g007700.2.1	Tomato	plastid	48.77	46.92
Solyc07g056150.2.1	Tomato	cytosol, nucleus	46.31	44.34
Zm00001d017456_P003	Maize	cytosol	87.19	44.14
Solyc06g060210.1.1	Tomato	cytosol	39.9	39.9

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888
GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	UniProt:Q41340	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc05g052070.2	EnsemblPlants:Solyc05g052070.2.1	TIGRFAMs:TIGR00231	EMBL:U38466	UniParc:UPI00000A65FA	:

Description

Small GTP-binding protein [Source:UniProtKB/TrEMBL;Acc:Q41340]

Coordinates

chr5:-:62410368..62413664

Molecular Weight (calculated)

22619.7 Da

IEP (calculated)

5.050

GRAVY (calculated)

-0.373

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDI TDQESFNNVK
101: QWLSEIDRYA SENVNKLLVG NKSDLNDNRA VSYDTAKAFA DEIGIPFMEA SAKSATNVEQ AFMAMAAEIK NRMATQPASN NAKPPTVQIR GQPVNQKNGC
201: CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.