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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, extracellular

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400022823 Potato cytosol 100.0 100.0
Solyc06g005350.2.1 Tomato cytosol 63.43 95.14
Solyc10g086350.1.1 Tomato cytosol, nucleus 94.44 94.44
VIT_08s0040g02490.t01 Wine grape cytosol 93.98 93.98
Solyc11g073050.1.1 Tomato endoplasmic reticulum 93.52 93.52
Solyc04g011360.2.1 Tomato plastid 93.52 93.52
AT3G53610.3 Thale cress cytosol 92.59 92.59
Zm00001d038380_P001 Maize extracellular, plasma membrane 91.67 92.09
Zm00001d010538_P005 Maize cytosol 91.67 92.09
Os07t0239400-01 Rice plasma membrane 91.67 92.09
EES19652 Sorghum cytosol 91.67 92.09
Os05t0461300-01 Rice plastid 91.67 91.67
GSMUA_Achr9P03220_001 Banana cytosol 91.2 91.2
GSMUA_Achr6P34270_001 Banana cytosol 91.2 91.2
GSMUA_Achr11P... Banana cytosol 91.2 91.2
GSMUA_Achr10P... Banana cytosol 91.2 91.2
Os03t0819900-01 Rice plasma membrane 90.28 91.12
GSMUA_AchrUn_... Banana cytosol 90.74 90.74
TraesCS1A01G286200.1 Wheat cytosol 89.81 90.65
TraesCS1B01G295600.1 Wheat cytosol 89.81 90.65
EER93195 Sorghum cytosol 89.81 90.65
TraesCS1D01G285200.1 Wheat cytosol 89.81 90.65
GSMUA_Achr10P... Banana cytosol 90.28 90.28
Zm00001d034638_P001 Maize cytosol 89.81 90.23
TraesCS5B01G489300.1 Wheat golgi 88.89 89.72
TraesCS3A01G356000.3 Wheat plastid 89.35 89.35
GSMUA_Achr8P02620_001 Banana cytosol 89.35 89.35
TraesCS5A01G476400.1 Wheat cytosol 88.43 89.25
TraesCS3B01G388900.1 Wheat cytosol 88.89 88.89
TraesCS5D01G489700.1 Wheat cytosol 87.96 88.78
OQU88745 Sorghum cytosol 91.67 87.61
HORVU1Hr1G072070.1 Barley cytosol 86.11 82.67
TraesCS3D01G350000.3 Wheat cytosol 88.89 80.67
CDY07577 Canola cytosol 92.59 74.91
CDY52746 Canola cytosol 92.13 73.98
Bra003149.1-P Field mustard cytosol 92.13 73.98
HORVU5Hr1G112790.2 Barley cytosol, extracellular 82.41 68.73
HORVU3Hr1G086830.7 Barley cytosol 76.39 62.26
Solyc08g078070.2.1 Tomato nucleus 57.41 61.08
Solyc05g053940.2.1 Tomato nucleus, plastid, unclear 56.94 60.59
Solyc05g052070.2.1 Tomato unclear 55.56 59.11
Solyc01g090170.2.1 Tomato unclear 55.56 59.11
Solyc01g103370.2.1 Tomato endoplasmic reticulum 53.24 56.93
Solyc12g011130.1.1 Tomato cytosol 42.13 43.13
Solyc02g093530.2.1 Tomato plastid 42.13 43.13
Solyc10g007700.2.1 Tomato plastid 41.67 42.65
Solyc07g056150.2.1 Tomato cytosol, nucleus 39.81 40.57
Solyc06g060210.1.1 Tomato cytosol 36.57 38.92
Protein Annotations
MapMan:22.8.1.5Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0006810GO:GO:0006904GO:GO:0008150GO:GO:0009306
GO:GO:0009987GO:GO:0016787GO:GO:0017157UniProt:K4CR64InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF642SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase
EnsemblPlantsGene:Solyc09g010370.2EnsemblPlants:Solyc09g010370.2.1TIGRFAMs:TIGR00231UniParc:UPI000276AD06SEG:seg:
Description
No Description!
Coordinates
chr9:-:3753893..3759018
Molecular Weight (calculated)
23952.4 Da
IEP (calculated)
8.022
GRAVY (calculated)
-0.361
Length
216 amino acids
Sequence
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD SKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNMNVEEVF FSIARDIKQR LAESDSKAEP QTIRINQPDQ
201: GAGSSQGAQK SACCGS
Best Arabidopsis Sequence Match ( AT3G53610.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDS VNKILVGNKA DMDESKRAVP KSKGQALADE YGMKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDARAEP QTIKINQSDQ
201: GAGTSQATQK SACCGT
Arabidopsis Description
RABE1ARas-related protein RABE1a [Source:UniProtKB/Swiss-Prot;Acc:O24466]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.