Subcellular Localization
min:
: max
Winner_takes_all: unclear
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
- endoplasmic reticulum 3
- golgi 3
- extracellular 2
- vacuole 2
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
unclear:
26455813
|
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g053940.2.1 | Tomato | nucleus, plastid, unclear | 89.16 | 89.16 |
| KRH01059 | Soybean | endoplasmic reticulum | 85.71 | 86.14 |
| KRH40178 | Soybean | endoplasmic reticulum | 85.22 | 85.64 |
| KRH66494 | Soybean | endoplasmic reticulum | 85.22 | 85.22 |
| GSMUA_Achr8P15030_001 | Banana | cytosol | 85.22 | 85.22 |
| Bra024956.1-P | Field mustard | cytosol | 84.73 | 85.15 |
| Solyc08g078070.2.1 | Tomato | nucleus | 84.73 | 84.73 |
| GSMUA_Achr11P... | Banana | cytosol | 84.73 | 84.73 |
| Bra017497.1-P | Field mustard | cytosol | 84.24 | 84.65 |
| Bra022113.1-P | Field mustard | cytosol | 84.24 | 84.65 |
| GSMUA_Achr2P18340_001 | Banana | plasma membrane | 84.24 | 84.65 |
| AT1G02130.1 | Thale cress | cytosol | 83.74 | 83.74 |
| Bra012658.1-P | Field mustard | cytosol | 83.25 | 83.66 |
| TraesCS3A01G056600.1 | Wheat | cytosol | 83.25 | 83.25 |
| TraesCS3B01G070300.2 | Wheat | cytosol | 83.25 | 83.25 |
| Solyc05g052070.2.1 | Tomato | unclear | 83.25 | 83.25 |
| TraesCS3D01G056600.1 | Wheat | plastid | 83.25 | 83.25 |
| Os01t0179700-01 | Rice | plasma membrane | 82.76 | 82.76 |
| Os02t0653800-01 | Rice | plasma membrane | 82.76 | 82.76 |
| TraesCS3D01G056500.1 | Wheat | golgi | 82.27 | 82.27 |
| EES07529 | Sorghum | cytosol | 81.77 | 81.77 |
| TraesCS3A01G056500.1 | Wheat | cytosol | 80.79 | 80.79 |
| HORVU3Hr1G010800.8 | Barley | cytosol | 62.56 | 77.91 |
| KRH48822 | Soybean | cytosol, endoplasmic reticulum | 59.11 | 75.95 |
| TraesCS3A01G056800.1 | Wheat | cytosol | 70.44 | 75.66 |
| GSMUA_Achr1P04400_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 84.24 | 75.33 |
| Solyc01g103370.2.1 | Tomato | endoplasmic reticulum | 72.91 | 73.27 |
| CDY38055 | Canola | cytosol | 84.73 | 72.57 |
| TraesCS3A01G056900.1 | Wheat | mitochondrion | 53.2 | 64.67 |
| Solyc06g005350.2.1 | Tomato | cytosol | 44.34 | 62.5 |
| VIT_15s0021g01410.t01 | Wine grape | cytosol | 62.56 | 61.95 |
| GSMUA_Achr7P06570_001 | Banana | cytosol | 83.74 | 61.82 |
| Bra040162.1-P | Field mustard | cytosol | 81.77 | 60.58 |
| Zm00001d051336_P001 | Maize | plastid | 80.3 | 59.93 |
| HORVU3Hr1G010780.1 | Barley | plasma membrane | 82.27 | 59.86 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plastid | 84.73 | 57.14 |
| TraesCS3A01G056700.1 | Wheat | cytosol | 71.43 | 56.86 |
| Solyc04g011360.2.1 | Tomato | plastid | 59.61 | 56.02 |
| Solyc11g073050.1.1 | Tomato | endoplasmic reticulum | 59.11 | 55.56 |
| Solyc09g010370.2.1 | Tomato | extracellular, plastid | 59.11 | 55.56 |
| Solyc10g086350.1.1 | Tomato | cytosol, nucleus | 58.62 | 55.09 |
| Solyc02g093530.2.1 | Tomato | plastid | 50.74 | 48.82 |
| Solyc12g011130.1.1 | Tomato | cytosol | 47.78 | 45.97 |
| Solyc10g007700.2.1 | Tomato | plastid | 47.78 | 45.97 |
| Solyc07g056150.2.1 | Tomato | cytosol, nucleus | 45.32 | 43.4 |
| Zm00001d017456_P003 | Maize | cytosol | 80.3 | 40.65 |
| Solyc06g060210.1.1 | Tomato | cytosol | 37.44 | 37.44 |
Protein Annotations
| MapMan:22.8.1.4 | Gene3D:3.40.50.300 | GO:GO:0000139 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005794 | GO:GO:0006810 | GO:GO:0006888 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016787 | UniProt:K4AYV8 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF666 | SMART:SM00173 | SMART:SM00174 |
| SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | EnsemblPlantsGene:Solyc01g090170.2 |
| EnsemblPlants:Solyc01g090170.2.1 | TIGRFAMs:TIGR00231 | UniParc:UPI0002761D58 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1:+:83802202..83809193
Molecular Weight (calculated)
22459.5 Da
IEP (calculated)
4.850
GRAVY (calculated)
-0.254
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTEYDYLFK LLLIGDSGVG KSCLLLRFAD DTYQESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLSEIDRYA TPNVNKILVG NKSDLVASRV VSYETAKAFA DEIGIPFLET SAKDASNVEE SFMAMTAAIK KSMANQPVPN AAQPPNVNIR GQPVAQNSGC
201: CSS
101: QWLSEIDRYA TPNVNKILVG NKSDLVASRV VSYETAKAFA DEIGIPFLET SAKDASNVEE SFMAMTAAIK KSMANQPVPN AAQPPNVNIR GQPVAQNSGC
201: CSS
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST
Arabidopsis Description
RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.