Factsheet for Solyc11g073050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082060.1.1
Solyc02g082730.2.1
Solyc03g062940.2.1	peroxisome
Solyc03g121460.1.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	Solyc03g062940.2.1	AT1G29260.1	23297417
AT3G46060.1	Solyc02g082730.2.1	AT3G06540.1	21798944
AT3G46060.1	Solyc03g121460.1.1	AT3G13720.1	21798944
AT3G46060.1	Solyc02g082060.1.1	AT4G25660.1	21798944
AT3G46060.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT3G46060.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040138	Potato	cytosol	98.61	98.61
CDY72056	Canola	cytosol	56.02	96.8
Solyc06g005350.2.1	Tomato	cytosol	63.43	95.14
KRH29838	Soybean	endoplasmic reticulum	93.52	94.39
Bra019475.1-P	Field mustard	cytosol	93.98	93.98
Os07t0239400-01	Rice	plasma membrane	93.52	93.95
KRH24835	Soybean	cytosol	93.06	93.93
CDY30926	Canola	cytosol	93.52	93.52
Solyc09g010370.2.1	Tomato	extracellular, plastid	93.52	93.52
VIT_06s0004g04200.t01	Wine grape	cytosol	93.52	93.52
CDX86045	Canola	cytosol	92.59	92.59
AT3G46060.1	Thale cress	cytosol	92.59	92.59
Bra002527.1-P	Field mustard	cytosol	92.59	92.59
AT5G59840.1	Thale cress	cytosol	92.59	92.59
CDY31592	Canola	cytosol	92.59	92.59
Zm00001d010538_P005	Maize	cytosol	92.13	92.56
EES19652	Sorghum	cytosol	92.13	92.56
Zm00001d038380_P001	Maize	extracellular, plasma membrane	92.13	92.56
CDY71506	Canola	cytosol	92.13	92.13
CDX68365	Canola	cytosol	92.13	92.13
Os05t0461300-01	Rice	plastid	92.13	92.13
CDX77855	Canola	cytosol	92.13	92.13
TraesCS1A01G286200.1	Wheat	cytosol	91.2	92.06
TraesCS1B01G295600.1	Wheat	cytosol	91.2	92.06
TraesCS1D01G285200.1	Wheat	cytosol	91.2	92.06
Os03t0819900-01	Rice	plasma membrane	91.2	92.06
GSMUA_Achr11P...	Banana	cytosol	91.67	91.67
GSMUA_Achr9P03220_001	Banana	cytosol	91.67	91.67
GSMUA_Achr6P34270_001	Banana	cytosol	91.67	91.67
GSMUA_Achr10P...	Banana	cytosol	91.67	91.67
KRH23030	Soybean	endoplasmic reticulum	91.2	91.63
KRH10292	Soybean	cytosol	91.2	91.63
EER93195	Sorghum	cytosol	90.74	91.59
TraesCS3B01G388900.1	Wheat	cytosol	91.2	91.2
Solyc10g086350.1.1	Tomato	cytosol, nucleus	91.2	91.2
TraesCS3A01G356000.3	Wheat	plastid	91.2	91.2
Bra033830.1-P	Field mustard	cytosol	81.48	91.19
Zm00001d034638_P001	Maize	cytosol	90.74	91.16
CDX80224	Canola	cytosol	89.81	91.08
Bra006690.1-P	Field mustard	cytosol	90.74	90.74
CDX88726	Canola	cytosol	90.28	90.28
CDX88725	Canola	cytosol	90.28	90.28
GSMUA_AchrUn_...	Banana	cytosol	90.28	90.28
Solyc04g011360.2.1	Tomato	plastid	89.35	89.35
GSMUA_Achr8P02620_001	Banana	cytosol	88.89	88.89
TraesCS5B01G489300.1	Wheat	golgi	87.96	88.78
TraesCS5A01G476400.1	Wheat	cytosol	87.5	88.32
OQU88745	Sorghum	cytosol	92.13	88.05
GSMUA_Achr10P...	Banana	cytosol	87.96	87.96
Bra020282.1-P	Field mustard	cytosol	87.96	87.96
TraesCS5D01G489700.1	Wheat	cytosol	87.04	87.85
CDY09249	Canola	cytosol	86.57	86.57
HORVU1Hr1G072070.1	Barley	cytosol	88.43	84.89
TraesCS3D01G350000.3	Wheat	cytosol	91.2	82.77
CDY34032	Canola	cytosol	53.7	78.91
CDY70243	Canola	cytosol	53.24	75.66
CDX94925	Canola	cytosol	54.17	71.34
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	81.48	67.95
CDX99131	Canola	cytosol	93.06	65.26
HORVU3Hr1G086830.7	Barley	cytosol	79.17	64.53
Solyc08g078070.2.1	Tomato	nucleus	58.8	62.56
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	58.33	62.07
Solyc05g052070.2.1	Tomato	unclear	56.94	60.59
Solyc01g090170.2.1	Tomato	unclear	55.56	59.11
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	54.63	58.42
Bra038265.1-P	Field mustard	cytosol	92.59	53.19
Solyc12g011130.1.1	Tomato	cytosol	41.67	42.65
Solyc02g093530.2.1	Tomato	plastid	41.67	42.65
Solyc10g007700.2.1	Tomato	plastid	41.2	42.18
Solyc07g056150.2.1	Tomato	cytosol, nucleus	39.35	40.09
Solyc06g060210.1.1	Tomato	cytosol	36.11	38.42

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306
GO:GO:0009987	GO:GO:0016787	GO:GO:0017157	UniProt:K4DB11	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc11g073050.1	EnsemblPlants:Solyc11g073050.1.1	TIGRFAMs:TIGR00231	UniParc:UPI0002769FCB	SEG:seg	:

Description

No Description!

Coordinates

chr11:+:56164984..56168738

Molecular Weight (calculated)

23805.2 Da

IEP (calculated)

8.444

GRAVY (calculated)

-0.313

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LADTDSKAEP STLKINQPEA
201: GAGGSQTSQK SACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.