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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra010452.1-P
Bra010844.1-P peroxisome
Bra013908.1-P
Bra013910.1-P
Bra020182.1-P
Bra021502.1-P
Bra021503.1-P
Bra029586.1-P
Bra032295.1-P peroxisome

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G46060.1 Bra010844.1-P AT1G29260.1 23297417
AT3G46060.1 Bra032295.1-P AT1G29260.1 23297417
AT3G46060.1 Bra029586.1-P AT3G06540.1 21798944
AT3G46060.1 Bra021502.1-P AT3G13720.1 21798944
AT3G46060.1 Bra021503.1-P AT3G13720.1 21798944
AT3G46060.1 Bra010452.1-P AT4G25660.1 21798944
AT3G46060.1 Bra013908.1-P AT4G25660.1 21798944
AT3G46060.1 Bra013910.1-P AT4G25660.1 21798944
AT3G46060.1 Bra002403.1-P AT5G22290.1 21798944
AT3G46060.1 Bra006619.1-P AT5G22290.1 21798944
AT3G46060.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68365 Canola cytosol 98.45 87.96
CDY71506 Canola cytosol 98.45 87.96
AT3G46060.1 Thale cress cytosol 96.89 86.57
Bra019475.1-P Field mustard cytosol 96.37 86.11
Bra002527.1-P Field mustard cytosol 94.82 84.72
Bra006690.1-P Field mustard cytosol 94.3 84.26
KRH29838 Soybean endoplasmic reticulum 92.23 83.18
KRH24835 Soybean cytosol 91.71 82.71
VIT_06s0004g04200.t01 Wine grape cytosol 92.23 82.41
PGSC0003DMT400040138 Potato cytosol 92.23 82.41
Bra020282.1-P Field mustard cytosol 91.71 81.94
Solyc11g073050.1.1 Tomato endoplasmic reticulum 91.19 81.48
PGSC0003DMT400008917 Potato cytosol 90.16 80.56
KRH10292 Soybean cytosol 89.12 80.0
KRH23030 Soybean endoplasmic reticulum 89.12 80.0
Os03t0819900-01 Rice plasma membrane 88.6 79.91
Zm00001d034638_P001 Maize cytosol 88.6 79.53
EER93195 Sorghum cytosol 88.08 79.44
GSMUA_Achr11P... Banana cytosol 88.6 79.17
EES19652 Sorghum cytosol 88.08 79.07
Zm00001d038380_P001 Maize extracellular, plasma membrane 88.08 79.07
Os07t0239400-01 Rice plasma membrane 88.08 79.07
Zm00001d010538_P005 Maize cytosol 88.08 79.07
Os05t0461300-01 Rice plastid 88.08 78.7
GSMUA_Achr6P34270_001 Banana cytosol 88.08 78.7
GSMUA_Achr9P03220_001 Banana cytosol 88.08 78.7
GSMUA_Achr10P... Banana cytosol 88.08 78.7
TraesCS1D01G285200.1 Wheat cytosol 87.05 78.5
TraesCS1B01G295600.1 Wheat cytosol 87.05 78.5
TraesCS1A01G286200.1 Wheat cytosol 87.05 78.5
Solyc06g005350.2.1 Tomato cytosol 58.55 78.47
TraesCS3B01G388900.1 Wheat cytosol 87.05 77.78
TraesCS3A01G356000.3 Wheat plastid 87.05 77.78
TraesCS5B01G489300.1 Wheat golgi 85.49 77.1
GSMUA_AchrUn_... Banana cytosol 86.01 76.85
TraesCS5A01G476400.1 Wheat cytosol 84.97 76.64
GSMUA_Achr8P02620_001 Banana cytosol 85.49 76.39
TraesCS5D01G489700.1 Wheat cytosol 84.46 76.17
GSMUA_Achr10P... Banana cytosol 84.46 75.46
OQU88745 Sorghum cytosol 87.05 74.34
Bra005767.1-P Field mustard cytosol 81.87 72.81
HORVU1Hr1G072070.1 Barley cytosol 83.94 72.0
TraesCS3D01G350000.3 Wheat cytosol 87.05 70.59
Bra029803.1-P Field mustard cytosol 80.31 68.58
Bra003149.1-P Field mustard cytosol 92.23 66.17
HORVU5Hr1G112790.2 Barley cytosol, extracellular 77.72 57.92
HORVU3Hr1G086830.7 Barley cytosol 73.58 53.58
Bra024956.1-P Field mustard cytosol 55.96 53.47
Bra012658.1-P Field mustard cytosol 55.96 53.47
Bra022113.1-P Field mustard cytosol 55.44 52.97
Bra017497.1-P Field mustard cytosol 55.44 52.97
Bra038676.1-P Field mustard vacuole 53.89 50.49
Bra001418.1-P Field mustard cytosol, extracellular 53.37 50.0
Bra038265.1-P Field mustard cytosol 96.37 49.47
Bra040162.1-P Field mustard cytosol 54.92 38.69
Bra011645.1-P Field mustard cytosol 39.38 36.02
Bra021065.1-P Field mustard cytosol 38.86 35.71
Bra017733.1-P Field mustard cytosol 38.86 35.55
Bra026231.1-P Field mustard cytosol 38.86 35.55
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1EnsemblPlantsGene:Bra033830EnsemblPlants:Bra033830.1EnsemblPlants:Bra033830.1-PGO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0016787
UniProt:M4EYD8InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073
PANTHER:PTHR24073:SF826SMART:SM00173SMART:SM00174SMART:SM00175SUPFAM:SSF52540InterPro:Small_GTP-bd_dom
InterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00025439AESEG:seg::
Description
AT3G46060 (E=5e-055) ARA3 | ATRAB8A; GTP binding
Coordinates
chrA01:+:13723238..13724965
Molecular Weight (calculated)
21101.1 Da
IEP (calculated)
8.469
GRAVY (calculated)
-0.338
Length
193 amino acids
Sequence
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIGD TAGQERFRTI TTDIRNWIRN IEQHASDNVN
101: KILVGNKADM DESKRAVPTA KGQALADEYG IKFFETSAKT NLNVEEVFFS IGKDIKQRLS DTDSRAEPAT IKISQTEASG AGQATQKSAC CGS
Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
Arabidopsis Description
RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.