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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH05675
KRH08874
KRH10001
KRH11018 peroxisome
KRH21268 peroxisome
KRH22653
KRH23330
KRH26664
KRH28917
KRH35244
KRH38387
KRH44167
KRH47141
KRH76543

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G46060.1 KRH11018 AT1G29260.1 23297417
AT3G46060.1 KRH21268 AT1G29260.1 23297417
AT3G46060.1 KRH05675 AT3G06540.1 21798944
AT3G46060.1 KRH28917 AT3G06540.1 21798944
AT3G46060.1 KRH76543 AT3G06540.1 21798944
AT3G46060.1 KRH10001 AT3G13720.1 21798944
AT3G46060.1 KRH23330 AT3G13720.1 21798944
AT3G46060.1 KRH44167 AT3G13720.1 21798944
AT3G46060.1 KRH47141 AT3G13720.1 21798944
AT3G46060.1 KRH08874 AT4G25660.1 21798944
AT3G46060.1 KRH35244 AT4G25660.1 21798944
AT3G46060.1 KRH38387 AT4G25660.1 21798944
AT3G46060.1 KRH22653 AT5G22290.1 21798944
AT3G46060.1 KRH26664 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH24835 Soybean cytosol 99.53 99.53
CDY72056 Canola cytosol 56.07 96.0
KRH01606 Soybean endoplasmic reticulum 96.73 95.83
KRH70501 Soybean endoplasmic reticulum 96.73 95.83
Solyc06g005350.2.1 Tomato cytosol 64.02 95.14
AT5G59840.1 Thale cress cytosol 95.79 94.91
KRH36193 Soybean endoplasmic reticulum, extracellular 95.79 94.91
CDY30926 Canola cytosol 95.79 94.91
PGSC0003DMT400040138 Potato cytosol 95.79 94.91
VIT_06s0004g04200.t01 Wine grape cytosol 95.79 94.91
AT3G46060.1 Thale cress cytosol 95.33 94.44
KRG90563 Soybean cytosol 95.33 94.44
Bra019475.1-P Field mustard cytosol 95.33 94.44
CDY31592 Canola cytosol 95.33 94.44
KRH10292 Soybean cytosol 94.86 94.42
CDX68365 Canola cytosol 94.86 93.98
CDX77855 Canola cytosol 94.86 93.98
CDY71506 Canola cytosol 94.86 93.98
Bra002527.1-P Field mustard cytosol 94.86 93.98
KRH23030 Soybean endoplasmic reticulum 94.39 93.95
Solyc11g073050.1.1 Tomato endoplasmic reticulum 94.39 93.52
Bra006690.1-P Field mustard cytosol 94.39 93.52
CDX86045 Canola cytosol 94.39 93.52
CDX88726 Canola cytosol 93.93 93.06
CDX88725 Canola cytosol 93.93 93.06
PGSC0003DMT400008917 Potato cytosol 93.46 92.59
Bra033830.1-P Field mustard cytosol 83.18 92.23
GSMUA_Achr11P... Banana cytosol 92.99 92.13
Zm00001d010538_P005 Maize cytosol 92.52 92.09
Zm00001d038380_P001 Maize extracellular, plasma membrane 92.52 92.09
EES19652 Sorghum cytosol 92.52 92.09
CDX80224 Canola cytosol 91.59 92.02
GSMUA_Achr9P03220_001 Banana cytosol 92.52 91.67
GSMUA_Achr6P34270_001 Banana cytosol 92.52 91.67
Os05t0461300-01 Rice plastid 92.52 91.67
GSMUA_Achr10P... Banana cytosol 92.52 91.67
Os07t0239400-01 Rice plasma membrane 92.06 91.63
Os03t0819900-01 Rice plasma membrane 91.59 91.59
GSMUA_AchrUn_... Banana cytosol 92.06 91.2
Zm00001d034638_P001 Maize cytosol 91.59 91.16
TraesCS1D01G285200.1 Wheat cytosol 91.12 91.12
TraesCS1B01G295600.1 Wheat cytosol 91.12 91.12
TraesCS1A01G286200.1 Wheat cytosol 91.12 91.12
EER93195 Sorghum cytosol 91.12 91.12
Bra020282.1-P Field mustard cytosol 91.59 90.74
TraesCS3B01G388900.1 Wheat cytosol 90.65 89.81
GSMUA_Achr10P... Banana cytosol 90.65 89.81
TraesCS3A01G356000.3 Wheat plastid 90.65 89.81
CDY09249 Canola cytosol 90.65 89.81
TraesCS5B01G489300.1 Wheat golgi 89.72 89.72
TraesCS5A01G476400.1 Wheat cytosol 89.25 89.25
GSMUA_Achr8P02620_001 Banana cytosol 89.72 88.89
TraesCS5D01G489700.1 Wheat cytosol 88.78 88.78
OQU88745 Sorghum cytosol 91.59 86.73
HORVU1Hr1G072070.1 Barley cytosol 87.85 83.56
TraesCS3D01G350000.3 Wheat cytosol 90.65 81.51
CDY34032 Canola cytosol 55.14 80.27
CDY70243 Canola cytosol 54.67 76.97
CDX94925 Canola cytosol 55.14 71.95
HORVU5Hr1G112790.2 Barley cytosol, extracellular 82.24 67.95
CDX99131 Canola cytosol 94.86 65.91
KRH01059 Soybean endoplasmic reticulum 59.81 63.37
HORVU3Hr1G086830.7 Barley cytosol 78.04 63.02
KRH40178 Soybean endoplasmic reticulum 59.35 62.87
KRH04201 Soybean cytosol, extracellular 58.41 61.88
KRH57496 Soybean endoplasmic reticulum 58.41 61.88
KRH66494 Soybean endoplasmic reticulum 58.41 61.58
KRH06045 Soybean cytosol 54.21 57.71
KRH26285 Soybean endoplasmic reticulum 53.74 57.21
Bra038265.1-P Field mustard cytosol 94.39 53.72
KRH48822 Soybean cytosol, endoplasmic reticulum 38.32 51.9
KRH36659 Soybean cytosol 42.52 43.13
KRH11646 Soybean endoplasmic reticulum 42.52 43.13
KRG93957 Soybean endoplasmic reticulum 41.12 41.71
KRH58242 Soybean endoplasmic reticulum 41.12 41.71
Protein Annotations
EntrezGene:100775804MapMan:22.8.1.5Gene3D:3.40.50.300EMBL:ACUP02006829EnsemblPlantsGene:GLYMA_11G142300GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0006810
GO:GO:0006904GO:GO:0008150GO:GO:0009306GO:GO:0009987GO:GO:0016787GO:GO:0017157
UniProt:I1LK53EnsemblPlants:KRH29838ProteinID:KRH29838ProteinID:KRH29838.1InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF642SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase
TIGRFAMs:TIGR00231UniParc:UPI000233D564SEG:seg:::
Description
hypothetical protein
Coordinates
chr11:+:10855872..10860078
Molecular Weight (calculated)
23619.0 Da
IEP (calculated)
8.021
GRAVY (calculated)
-0.302
Length
214 amino acids
Sequence
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: ASFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEEVF FSIARDIKQR LADTDSKAEP STIKINQDQS
201: GGAGQAAQKS ACCG
Best Arabidopsis Sequence Match ( AT5G59840.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KSKGQALADE YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGS
Arabidopsis Description
Putative GTP-binding protein ara-3 [Source:UniProtKB/TrEMBL;Acc:Q9FJF1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.