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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
  • endoplasmic reticulum 3
  • golgi 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH04201 Soybean cytosol, extracellular 99.5 99.5
VIT_00s1372g00020.t01 Wine grape cytosol 95.05 96.97
Solyc08g078070.2.1 Tomato nucleus 94.55 94.09
GSMUA_Achr2P18340_001 Banana plasma membrane 94.06 94.06
PGSC0003DMT400067463 Potato cytosol 94.06 93.6
Os02t0653800-01 Rice plasma membrane 94.06 93.6
Os01t0179700-01 Rice plasma membrane 94.06 93.6
EES07529 Sorghum cytosol 93.07 92.61
GSMUA_Achr11P... Banana cytosol 93.07 92.61
KRH01059 Soybean endoplasmic reticulum 92.08 92.08
GSMUA_Achr8P15030_001 Banana cytosol 92.08 91.63
TraesCS3D01G056500.1 Wheat golgi 92.08 91.63
Bra022113.1-P Field mustard cytosol 90.59 90.59
Bra017497.1-P Field mustard cytosol 90.59 90.59
KRH40178 Soybean endoplasmic reticulum 90.59 90.59
TraesCS3D01G056600.1 Wheat plastid 90.59 90.15
TraesCS3A01G056500.1 Wheat cytosol 90.59 90.15
TraesCS3B01G070300.2 Wheat cytosol 90.59 90.15
TraesCS3A01G056600.1 Wheat cytosol 90.59 90.15
Bra024956.1-P Field mustard cytosol 90.1 90.1
KRH66494 Soybean endoplasmic reticulum 90.1 89.66
AT1G02130.1 Thale cress cytosol 90.1 89.66
Bra012658.1-P Field mustard cytosol 89.6 89.6
HORVU3Hr1G010800.8 Barley cytosol 70.79 87.73
TraesCS3A01G056800.1 Wheat cytosol 77.23 82.54
GSMUA_Achr1P04400_001 Banana endoplasmic reticulum, extracellular, plasma membrane 91.09 81.06
KRH48822 Soybean cytosol, endoplasmic reticulum 61.39 78.48
CDY38055 Canola cytosol 90.59 77.22
KRH06045 Soybean cytosol 76.73 77.11
KRH26285 Soybean endoplasmic reticulum 76.73 77.11
TraesCS3A01G056900.1 Wheat mitochondrion 57.92 70.06
GSMUA_Achr7P06570_001 Banana cytosol 93.56 68.73
Zm00001d051336_P001 Maize plastid 90.59 67.28
HORVU3Hr1G010780.1 Barley plasma membrane 92.08 66.67
Bra040162.1-P Field mustard cytosol 88.12 64.96
GSMUA_Achr11P... Banana endoplasmic reticulum, plastid 93.56 62.79
TraesCS3A01G056700.1 Wheat cytosol 78.71 62.35
KRH23030 Soybean endoplasmic reticulum 62.38 58.6
KRH10292 Soybean cytosol 62.38 58.6
KRH29838 Soybean endoplasmic reticulum 61.88 58.41
KRH24835 Soybean cytosol 61.39 57.94
KRH36193 Soybean endoplasmic reticulum, extracellular 61.88 57.87
KRH01606 Soybean endoplasmic reticulum 61.39 57.41
KRG90563 Soybean cytosol 61.39 57.41
KRH70501 Soybean endoplasmic reticulum 61.39 57.41
KRH11646 Soybean endoplasmic reticulum 48.02 45.97
KRH36659 Soybean cytosol 48.02 45.97
Zm00001d017456_P003 Maize cytosol 91.09 45.89
KRH58242 Soybean endoplasmic reticulum 46.53 44.55
KRG93957 Soybean endoplasmic reticulum 46.53 44.55
Protein Annotations
EntrezGene:100783333MapMan:22.8.1.4Gene3D:3.40.50.300EMBL:ACUP02002849EMBL:BT094131UniProt:C6T9G0
EnsemblPlantsGene:GLYMA_05G064300GO:GO:0000139GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005783GO:GO:0005789GO:GO:0005794GO:GO:0006810GO:GO:0006888GO:GO:0008150
GO:GO:0016020GO:GO:0016787EnsemblPlants:KRH57496ProteinID:KRH57496ProteinID:KRH57496.1InterPro:P-loop_NTPase
PFAM:PF00071PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF666SMART:SM00173
SMART:SM00174SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_dom
InterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00019AA8FA:::
Description
hypothetical protein
Coordinates
chr5:-:6280939..6283836
Molecular Weight (calculated)
22574.8 Da
IEP (calculated)
5.341
GRAVY (calculated)
-0.306
Length
202 amino acids
Sequence
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTANKV VSYETAKAFA DEIGIPFMET SAKNATNVEQ AFMAMAAEIK NRMASQPVNN ARPPTVQIRG QPVNQKAGCC
201: ST
Best Arabidopsis Sequence Match ( AT4G17530.1 )
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPPTVQIRG QPVNQQSGCC
201: SS
Arabidopsis Description
RABD2CRAB1C [Source:UniProtKB/TrEMBL;Acc:A0A178USY3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.