Factsheet for PGSC0003DMT400067463

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g078070.2.1	Tomato	nucleus	99.51	99.51
VIT_00s1372g00020.t01	Wine grape	cytosol	92.61	94.95
KRH57496	Soybean	endoplasmic reticulum	93.6	94.06
KRH04201	Soybean	cytosol, extracellular	93.6	94.06
GSMUA_Achr2P18340_001	Banana	plasma membrane	93.1	93.56
Os02t0653800-01	Rice	plasma membrane	92.61	92.61
Os01t0179700-01	Rice	plasma membrane	92.61	92.61
EES07529	Sorghum	cytosol	92.12	92.12
GSMUA_Achr11P...	Banana	cytosol	92.12	92.12
GSMUA_Achr8P15030_001	Banana	cytosol	91.63	91.63
Bra017497.1-P	Field mustard	cytosol	91.13	91.58
Bra022113.1-P	Field mustard	cytosol	91.13	91.58
Bra024956.1-P	Field mustard	cytosol	90.15	90.59
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.15	90.15
TraesCS3D01G056500.1	Wheat	golgi	89.66	89.66
Bra012658.1-P	Field mustard	cytosol	89.16	89.6
TraesCS3D01G056600.1	Wheat	plastid	89.16	89.16
TraesCS3B01G070300.2	Wheat	cytosol	89.16	89.16
TraesCS3A01G056600.1	Wheat	cytosol	89.16	89.16
AT1G02130.1	Thale cress	cytosol	89.16	89.16
PGSC0003DMT400041326	Potato	cytosol	89.16	89.16
TraesCS3A01G056500.1	Wheat	cytosol	88.18	88.18
HORVU3Hr1G010800.8	Barley	cytosol	68.97	85.89
TraesCS3A01G056800.1	Wheat	cytosol	75.86	81.48
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	89.66	80.18
CDY38055	Canola	cytosol	89.66	76.79
PGSC0003DMT400064019	Potato	cytosol, extracellular	74.38	74.75
TraesCS3A01G056900.1	Wheat	mitochondrion	56.16	68.26
Zm00001d051336_P001	Maize	plastid	89.66	66.91
GSMUA_Achr7P06570_001	Banana	cytosol	89.66	66.18
HORVU3Hr1G010780.1	Barley	plasma membrane	89.66	65.23
Bra040162.1-P	Field mustard	cytosol	87.19	64.6
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	92.61	62.46
TraesCS3A01G056700.1	Wheat	cytosol	75.37	60.0
PGSC0003DMT400040138	Potato	cytosol	62.56	58.8
PGSC0003DMT400071317	Potato	cytosol	61.08	57.41
PGSC0003DMT400049296	Potato	cytosol	61.08	57.41
PGSC0003DMT400022823	Potato	cytosol	61.08	57.41
PGSC0003DMT400008917	Potato	cytosol	61.08	57.41
PGSC0003DMT400079822	Potato	cytosol	48.28	46.45
PGSC0003DMT400032908	Potato	cytosol	48.28	46.45
PGSC0003DMT400020113	Potato	cytosol	48.28	46.45
Zm00001d017456_P003	Maize	cytosol	90.15	45.64
PGSC0003DMT400054721	Potato	cytosol	35.47	43.64

Protein Annotations

EntrezGene:102596483	MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1CHA8	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400026226	PGSC:PGSC0003DMG400026226	EnsemblPlants:PGSC0003DMT400067463	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002951C94
RefSeq:XP_006359229.1	:	:	:	:	:

Description

Small GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026226]

Coordinates

chr8:+:51200043..51203329

Molecular Weight (calculated)

22513.6 Da

IEP (calculated)

5.809

GRAVY (calculated)

-0.301

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLESYIST IGVDFKIRTV DQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKCDLTAQKV VSTETAQAFA DEIGIPFMET SAKNATNVEH AFMAMAASIK NRMASQPASN NARPPTVQIR GQPVNQKSGC
201: CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.