Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400003853 | |
| PGSC0003DMT400006409 | |
| PGSC0003DMT400015077 | |
| PGSC0003DMT400018924 | |
| PGSC0003DMT400022498 | peroxisome |
| PGSC0003DMT400023242 | peroxisome |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g005350.2.1 | Tomato | cytosol | 64.81 | 97.22 |
| PGSC0003DMT400040138 | Potato | cytosol | 94.91 | 94.91 |
| CDY72056 | Canola | cytosol | 54.63 | 94.4 |
| KRH29838 | Soybean | endoplasmic reticulum | 92.59 | 93.46 |
| KRH24835 | Soybean | cytosol | 92.13 | 92.99 |
| AT5G59840.1 | Thale cress | cytosol | 92.59 | 92.59 |
| CDY30926 | Canola | cytosol | 92.59 | 92.59 |
| VIT_06s0004g04200.t01 | Wine grape | cytosol | 92.13 | 92.13 |
| CDX68365 | Canola | cytosol | 92.13 | 92.13 |
| Bra019475.1-P | Field mustard | cytosol | 92.13 | 92.13 |
| CDY71506 | Canola | cytosol | 92.13 | 92.13 |
| Bra002527.1-P | Field mustard | cytosol | 92.13 | 92.13 |
| CDY31592 | Canola | cytosol | 92.13 | 92.13 |
| AT3G46060.1 | Thale cress | cytosol | 91.67 | 91.67 |
| PGSC0003DMT400022823 | Potato | cytosol | 91.67 | 91.67 |
| CDX77855 | Canola | cytosol | 91.2 | 91.2 |
| CDX86045 | Canola | cytosol | 91.2 | 91.2 |
| Bra006690.1-P | Field mustard | cytosol | 91.2 | 91.2 |
| Os07t0239400-01 | Rice | plasma membrane | 90.74 | 91.16 |
| PGSC0003DMT400071317 | Potato | cytosol | 90.74 | 90.74 |
| PGSC0003DMT400049296 | Potato | cytosol | 90.74 | 90.74 |
| CDX88726 | Canola | cytosol | 90.74 | 90.74 |
| CDX88725 | Canola | cytosol | 90.74 | 90.74 |
| KRH23030 | Soybean | endoplasmic reticulum | 90.28 | 90.7 |
| KRH10292 | Soybean | cytosol | 90.28 | 90.7 |
| Os03t0819900-01 | Rice | plasma membrane | 89.81 | 90.65 |
| Zm00001d038380_P001 | Maize | extracellular, plasma membrane | 89.81 | 90.23 |
| Zm00001d010538_P005 | Maize | cytosol | 89.81 | 90.23 |
| EES19652 | Sorghum | cytosol | 89.81 | 90.23 |
| EER93195 | Sorghum | cytosol | 89.35 | 90.19 |
| Bra033830.1-P | Field mustard | cytosol | 80.56 | 90.16 |
| CDX80224 | Canola | cytosol | 88.89 | 90.14 |
| Os05t0461300-01 | Rice | plastid | 89.81 | 89.81 |
| GSMUA_Achr6P34270_001 | Banana | cytosol | 89.81 | 89.81 |
| GSMUA_Achr11P... | Banana | cytosol | 89.81 | 89.81 |
| GSMUA_Achr9P03220_001 | Banana | cytosol | 89.81 | 89.81 |
| GSMUA_Achr10P... | Banana | cytosol | 89.81 | 89.81 |
| Zm00001d034638_P001 | Maize | cytosol | 89.35 | 89.77 |
| GSMUA_AchrUn_... | Banana | cytosol | 89.35 | 89.35 |
| TraesCS5B01G489300.1 | Wheat | golgi | 87.96 | 88.78 |
| TraesCS1D01G285200.1 | Wheat | cytosol | 87.96 | 88.78 |
| TraesCS1B01G295600.1 | Wheat | cytosol | 87.96 | 88.78 |
| TraesCS1A01G286200.1 | Wheat | cytosol | 87.96 | 88.78 |
| TraesCS5A01G476400.1 | Wheat | cytosol | 87.5 | 88.32 |
| Bra020282.1-P | Field mustard | cytosol | 87.96 | 87.96 |
| TraesCS3B01G388900.1 | Wheat | cytosol | 87.96 | 87.96 |
| TraesCS3A01G356000.3 | Wheat | plastid | 87.96 | 87.96 |
| TraesCS5D01G489700.1 | Wheat | cytosol | 87.04 | 87.85 |
| GSMUA_Achr8P02620_001 | Banana | cytosol | 87.5 | 87.5 |
| GSMUA_Achr10P... | Banana | cytosol | 87.04 | 87.04 |
| CDY09249 | Canola | cytosol | 87.04 | 87.04 |
| OQU88745 | Sorghum | cytosol | 89.35 | 85.4 |
| HORVU1Hr1G072070.1 | Barley | cytosol | 85.19 | 81.78 |
| TraesCS3D01G350000.3 | Wheat | cytosol | 87.96 | 79.83 |
| CDY34032 | Canola | cytosol | 53.24 | 78.23 |
| CDY70243 | Canola | cytosol | 52.78 | 75.0 |
| CDX94925 | Canola | cytosol | 53.7 | 70.73 |
| HORVU5Hr1G112790.2 | Barley | cytosol, extracellular | 81.48 | 67.95 |
| CDX99131 | Canola | cytosol | 91.67 | 64.29 |
| HORVU3Hr1G086830.7 | Barley | cytosol | 75.46 | 61.51 |
| PGSC0003DMT400034028 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.41 | 61.08 |
| PGSC0003DMT400067463 | Potato | cytosol | 57.41 | 61.08 |
| PGSC0003DMT400041326 | Potato | cytosol | 56.02 | 59.61 |
| PGSC0003DMT400064019 | Potato | cytosol, extracellular | 54.17 | 57.92 |
| Bra038265.1-P | Field mustard | cytosol | 91.2 | 52.39 |
| PGSC0003DMT400020113 | Potato | cytosol | 42.13 | 43.13 |
| PGSC0003DMT400079822 | Potato | cytosol | 41.67 | 42.65 |
| PGSC0003DMT400032908 | Potato | cytosol | 41.67 | 42.65 |
| PGSC0003DMT400054721 | Potato | cytosol | 30.09 | 39.39 |
Protein Annotations
| EntrezGene:102582485 | EntrezGene:102598502 | MapMan:22.8.1.5 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:M0ZVA2 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | EnsemblPlantsGene:PGSC0003DMG400003470 | PGSC:PGSC0003DMG400003470 | EnsemblPlants:PGSC0003DMT400008917 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF626 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI0002969D90 | RefSeq:XP_006363358.1 | RefSeq:XP_006363359.1 | RefSeq:XP_006367787.1 | SEG:seg | : |
Description
Ethylene-responsive small GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003470]
Coordinates
chr6:+:5890213..5895589
Molecular Weight (calculated)
23701.2 Da
IEP (calculated)
8.020
GRAVY (calculated)
-0.331
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTNFITTIGI DFKIRTIELE GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNITNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEQVF MSIAKDIKQR LSDTDSKAEP STIKINQPDA
201: GAGGGQPGQK SACCGS
101: SSFNNITNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEQVF MSIAKDIKQR LSDTDSKAEP STIKINQPDA
201: GAGGGQPGQK SACCGS
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
Arabidopsis Description
RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.