Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400009864 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35860.1 | PGSC0003DMT400009864 | AT2G36840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g093530.2.1 | Tomato | plastid | 99.53 | 99.53 |
| VIT_14s0066g00180.t01 | Wine grape | cytosol | 92.89 | 93.78 |
| KRG93957 | Soybean | endoplasmic reticulum | 92.42 | 92.42 |
| Bra011645.1-P | Field mustard | cytosol | 91.47 | 91.47 |
| KRH58242 | Soybean | endoplasmic reticulum | 91.47 | 91.47 |
| CDX75535 | Canola | cytosol | 91.47 | 91.47 |
| CDX69177 | Canola | cytosol | 91.47 | 91.47 |
| AT4G35860.1 | Thale cress | cytosol | 90.52 | 90.52 |
| CDY47039 | Canola | plasma membrane | 90.05 | 90.05 |
| Bra017733.1-P | Field mustard | cytosol | 90.05 | 90.05 |
| CDX72559 | Canola | cytosol | 89.57 | 89.57 |
| PGSC0003DMT400079822 | Potato | cytosol | 87.2 | 87.2 |
| PGSC0003DMT400020113 | Potato | cytosol | 86.73 | 86.73 |
| PGSC0003DMT400054721 | Potato | cytosol | 65.88 | 84.24 |
| PGSC0003DMT400041326 | Potato | cytosol | 48.34 | 50.25 |
| PGSC0003DMT400034028 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 46.92 | 48.77 |
| PGSC0003DMT400067463 | Potato | cytosol | 46.45 | 48.28 |
| PGSC0003DMT400064019 | Potato | cytosol, extracellular | 44.08 | 46.04 |
| PGSC0003DMT400049296 | Potato | cytosol | 43.6 | 42.59 |
| PGSC0003DMT400040138 | Potato | cytosol | 43.13 | 42.13 |
| PGSC0003DMT400022823 | Potato | cytosol | 42.65 | 41.67 |
| PGSC0003DMT400071317 | Potato | cytosol | 42.65 | 41.67 |
| PGSC0003DMT400008917 | Potato | cytosol | 42.65 | 41.67 |
Protein Annotations
| EntrezGene:102586319 | MapMan:22.8.1.2 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016787 | UniProt:M1AYA4 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | EnsemblPlantsGene:PGSC0003DMG400012639 | PGSC:PGSC0003DMG400012639 | EnsemblPlants:PGSC0003DMT400032908 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF597 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0002954CDC | RefSeq:XP_006338636.1 |
Description
GTP-binding 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400012639]
Coordinates
chr2:-:47552568..47557532
Molecular Weight (calculated)
23303.7 Da
IEP (calculated)
8.061
GRAVY (calculated)
-0.292
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTI DGKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMTIMLIGNK SDLSHRRAVS KEEGEQFAKE NGLLFLEASA RTAQSVEEAF IQTAAKILQK IQEGVFDVSN ESSGIKVGYG RTQGPAGPRD
201: GAVAQRGGCC S
101: LEDARQHANP NMTIMLIGNK SDLSHRRAVS KEEGEQFAKE NGLLFLEASA RTAQSVEEAF IQTAAKILQK IQEGVFDVSN ESSGIKVGYG RTQGPAGPRD
201: GAVAQRGGCC S
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
Arabidopsis Description
RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.